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NCBI C++ ToolKit: src/gui/core/project_view_factory.cpp Source File

num_objects = objs.size();

( num_objects <= 0 ){

}

( num_objects == 1 ){

vector<int>( 1, 0 );

vector<int> groups( num_objects, -1 );

vector<CSeq_id_Handle> loc_handles;

vector< set<CSeq_id_Handle> > aln_handles;

(

ix = 0; ix < num_objects; ix++ ){

* loc =

*

( objs[ix].object.GetPointer() );

* scope =

*

( objs[ix].scope.GetPointer() );

vector<CSeq_id_Handle>::iterator found =

find( loc_handles.begin(), loc_handles.end(), idh )

( found != loc_handles.end() ){

groups[ix] =

(found - loc_handles.begin());

groups[ix] =

(loc_handles.size());

loc_handles.push_back( idh );

* scope =

*

( objs[ix].scope.GetPointer() );

( num_seqs <= 0 ){

(

q = 0; q < num_seqs; q++ ){

vector< set<CSeq_id_Handle> >::iterator found =

find( aln_handles.begin(), aln_handles.end(), idh_set )

( found != aln_handles.end() ){

groups[ix] = (

)(found - aln_handles.begin() + num_objects);

groups[ix] = (

)(aln_handles.size() + num_objects);

aln_handles.push_back( idh_set );

TIdsToObjectsMap handle_groups;

(

.IsNull() || scope.

() ){

vector<CSeq_id_Handle> idh_vec;

( num_seqs <= 0 ){

(

seqix = 0; seqix < num_seqs; seqix++ ){

idh_vec.push_back( *idh_itr );

( idh_vec.size() == 1 ){

idh_vec.push_back( idh_vec.front() );

handle_groups[idh_vec].push_back( *obtr );

objects_map.

();

vector<CSeq_id_Handle>& idh_vec = sidhtr->first;

( vector<CSeq_id_Handle>, idhtr, idh_vec ){

+= (idh ? idh : *idhtr).

()->GetSeqIdString(

);

( !

.empty() ){

objects_map[

] = group;

single.push_back( *scobtr );

objects_map[

].push_back( *scobtr );

TDim CheckNumRows(void) const

Validatiors.

const CSeq_id & GetSeq_id(TDim row) const

Get seq-id (the first one if segments have different ids).

CViewTypeDescriptor - holds description of a view type.

IOpenViewManager - interface dealing with a series of open view operations.

virtual const CViewTypeDescriptor & GetViewTypeDescriptor() const

returns a Descriptor for the View Type supported by the Factory

virtual int TestInputObjects(TConstScopedObjects &objects)=0

tests input objects (not using object conversion) and returns a combination of ETestResult flags bett...

virtual IOpenViewManager * GetOpenViewManager()

virtual bool IsCompatibleWith(const CObject &object, objects::CScope &scope)

virtual vector< int > CombineInputObjects(const TConstScopedObjects &objects)

virtual const CProjectViewTypeDescriptor & GetProjectViewTypeDescriptor() const =0

returns a Descriptor for the View Type supported by the Factory

virtual void CombineObjects(const TConstScopedObjects &objects, TObjectsMap &objects_map)

iterator_bool insert(const value_type &val)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

vector< SConstScopedObject > TConstScopedObjects

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

CSeq_id_Handle GetIdHandle(const CSeq_loc &loc, CScope *scope)

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

bool IsNull(void) const THROWS_NONE

Check if pointer is null – same effect as Empty().

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static const char label[]

unsigned int

A callback function used to compare two keys in a database.

static bool GetSeqId(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)

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