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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/process__title_8hpp_source.html below:

NCBI C++ ToolKit: src/app/streamtest/process_title.hpp Source File

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33 #ifndef __process_title__hpp__ 34 #define __process_title__hpp__ 66 m_out

= args[

"o"

] ? &(args[

"o"

].AsOutputFile()) : &cout;

68 string

options = args[

"options"

].AsString();

69 if

( options ==

"ignore_existing"

) {

99 const CSeq_id

& sid = **sid_itr;

114 const CSeq_id

& sid = **sid_itr;

134 if

(gi_string.empty() || accn_string.empty()) {

137

m_out

<< gi_string <<

"|"

<< accn_string;

157

m_out

<< title << endl;

void ProcessInitialize(const CArgs &args)

virtual void SeqEntryInitialize(CRef< CSeq_entry > &se)

CRef< CSeq_entry > m_entry

unsigned int m_objectcount

virtual void SeqEntryInitialize(CRef< CSeq_entry > &se)

void x_TitleSeqIdWrite(const CBioseq &bioseq)

void ProcessInitialize(const CArgs &args)

static const char * str(char *buf, int n)

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Error(CExceptionArgs_Base &args)

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

const string AsFastaString(void) const

virtual void WriteAsFasta(ostream &out) const

Implement serializable interface.

NCBI_XOBJUTIL_EXPORT string GetTitle(const CBioseq_Handle &hnd, TGetTitleFlags flags=0)

@ fGetTitle_Reconstruct

ignore existing title Seqdesc.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

E_Choice Which(void) const

Which variant is currently selected.

E_Choice

Choice variants.

#define FOR_EACH_SEQID_ON_BIOSEQ(Itr, Var)

FOR_EACH_SEQID_ON_BIOSEQ EDIT_EACH_SEQID_ON_BIOSEQ.

#define NCBI_SEQID(Type)

@NAME Convenience macros for NCBI objects

#define VISIT_ALL_BIOSEQS_WITHIN_SEQENTRY(Itr, Var)

VISIT_ALL_BIOSEQS_WITHIN_SEQENTRY.

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