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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/process__eutils_8hpp_source.html below:

NCBI C++ ToolKit: src/app/streamtest/process_eutils.hpp Source File

44 #ifndef __process_eutils__hpp__ 45 #define __process_eutils__hpp__ 58 if

(

m_Host

.empty() ||

m_Url

.empty())

return false

;

59 for

(

int

attempt = 0; attempt < 5; ++attempt) {

84 int

sleep_secs = ::sqrt((

double

)attempt);

112

string::size_type pos =

m_Path

.rfind(suffix);

113 return

(pos != string::npos && pos ==

m_Path

.size() - strlen(suffix));

117 bool error

(

const string

& message)

131 if

( !

m_Path

.empty() ) {

147

string::size_type pos =

m_Path

.find_last_of(

"/"

);

148 if

(pos != string::npos) {

157 bool text

(

const string

& contents)

159 if

(contents.empty()) {

163 bool

empty_text =

true

;

165 for

(

= 0;

< contents.length();

++) {

166 if

(contents [

] !=

' '

167

contents [

] !=

'\n'

168

contents [

] !=

'\r'

169

contents [

] !=

'\t'

) {

177 if

Text

(contents)) {

196 m_Host

"eutils.ncbi.nlm.nih.gov"

;

197 m_Url

"/entrez/eutils/esearch.fcgi"

;

201 bool Text

(

const string

& contents)

211 if

(

m_Uids

.size() > 0)

return true

;

225 m_Host

"eutils.ncbi.nlm.nih.gov"

;

226 m_Url

"/entrez/eutils/esummary.fcgi"

;

242 if

PathSuffixIs

(

"/DocumentSummary"

))

return true

;

244 if

(

m_Iso

.empty())

return true

;

248

}

else if

m_Title

.empty()) {

250

}

else if

m_Issn

.empty()) {

259 bool Text

(

const string

& contents)

261 if

(

PathSuffixIs

(

"/DocumentSummary/ISOAbbreviation"

)) {

262 if

(

m_Iso

.empty()) {

281 if

(

m_Strs

.size() > 0)

return true

;

295

0x00, 0x01, 0x20, 0x20, 0x20, 0x20, 0x20, 0x20,

297

0x20, 0x20, 0x20, 0x20, 0x20, 0x20, 0x20, 0x20,

299

0x20, 0x20, 0x20, 0x20, 0x20, 0x20, 0x20, 0x20,

301

0x20, 0x20, 0x20, 0x20, 0x20, 0x20, 0x20, 0x1F,

303

0x20, 0x20, 0x20, 0x20, 0x20, 0x20, 0x20, 0x27,

305

0x20, 0x20, 0x20, 0x20, 0x2C, 0x20, 0x20, 0x2F,

307

0x30, 0x31, 0x32, 0x33, 0x34, 0x35, 0x36, 0x37,

309

0x38, 0x39, 0x20, 0x20, 0x20, 0x20, 0x20, 0x20,

311

0x40, 0x61, 0x62, 0x63, 0x64, 0x65, 0x66, 0x67,

313

0x68, 0x69, 0x6A, 0x6B, 0x6C, 0x6D, 0x6E, 0x6F,

315

0x70, 0x71, 0x72, 0x73, 0x74, 0x75, 0x76, 0x77,

317

0x78, 0x79, 0x7A, 0x20, 0x20, 0x20, 0x20, 0x20,

319

0x60, 0x61, 0x62, 0x63, 0x64, 0x65, 0x66, 0x67,

321

0x68, 0x69, 0x6A, 0x6B, 0x6C, 0x6D, 0x6E, 0x6F,

323

0x70, 0x71, 0x72, 0x73, 0x74, 0x75, 0x76, 0x77,

325

0x78, 0x79, 0x7A, 0x20, 0x20, 0x20, 0x20, 0x20,

327

0x80, 0x81, 0x82, 0x83, 0x84, 0x85, 0x86, 0x87,

329

0x88, 0x89, 0x8A, 0x8B, 0x8C, 0x8D, 0x8E, 0x8F,

331

0x90, 0x91, 0x92, 0x93, 0x94, 0x95, 0x96, 0x97,

333

0x98, 0x99, 0x9A, 0x9B, 0x9C, 0x9D, 0x9E, 0x9F,

335

0xA0, 0xA1, 0xA2, 0xA3, 0xA4, 0xA5, 0xA6, 0xA7,

337

0xA8, 0xA9, 0xAA, 0xAB, 0xAC, 0xAD, 0xAE, 0xAF,

339

0xB0, 0xB1, 0xB2, 0xB3, 0xB4, 0xB5, 0xB6, 0xB7,

341

0xB8, 0xB9, 0xBA, 0xBB, 0xBC, 0xBD, 0xBE, 0xBF,

343

0xC0, 0xC1, 0xC2, 0xC3, 0xC4, 0xC5, 0xC6, 0xC7,

345

0xC8, 0xC9, 0xCA, 0xCB, 0xCC, 0xCD, 0xCE, 0xCF,

347

0xD0, 0xD1, 0xD2, 0xD3, 0xD4, 0xD5, 0xD6, 0xD7,

349

0xD8, 0xD9, 0xDA, 0xDB, 0xDC, 0xDD, 0xDE, 0xDF,

351

0xE0, 0xE1, 0xE2, 0xE3, 0xE4, 0xE5, 0xE6, 0xE7,

353

0xE8, 0xE9, 0xEA, 0xEB, 0xEC, 0xED, 0xEE, 0xEF,

355

0xF0, 0xF1, 0xF2, 0xF3, 0xF4, 0xF5, 0xF6, 0xF7,

357

0xF8, 0xF9, 0xFA, 0xFB, 0xFC, 0xFD, 0xFE, 0xFF

368 bool DoOneESearch

(

string

db,

string

term,

string

field, vector<int>& uids)

376 query

"&retmode=xml&retmax=200"

;

390 query

"&retmax=200&version=2.0&id="

;

391 for

(

size_t i

= 0;

< uids.size();

++) {

407 if

(

str

.length() != 9)

return false

;

410 if

(ch !=

'-'

&& ch !=

' '

&& ch !=

'+'

)

return false

;

412 for

(

int i

= 0;

< 9;

++) {

414 if

(ch >=

'0'

&& ch <=

'9'

)

continue

;

416 if

(ch ==

'-'

|| ch ==

'+'

|| ch ==

' '

)

continue

;

419 if

(ch ==

'X'

|| ch ==

'x'

)

continue

;

431 for

(

size_t i

= 0;

journal

.size();

++) {

495 m_out

= args[

"o"

] ? &(args[

"o"

].AsOutputFile()) : &cout;

496 m_journal

= args[

"journal"

].AsString();

This stream exchanges data with an HTTP server located at the URL: http[s]://host[:port]/path[?...

bool LooksLikeISSN(string str)

bool DoOneESummary(string db, vector< int > &uids, vector< string > &strs)

bool DoJournalSearch(string journal, vector< int > &uids)

bool DoOneESearch(string db, string term, string field, vector< int > &uids)

bool DoJournalSummary(vector< int > &uids, vector< string > &strs)

bool Text(const string &contents)

CESearchGeneric(vector< int > &uids)

vector< string > & m_Strs

bool Text(const string &contents)

bool EndElement(const string &name)

bool StartElement(const string &name)

CESummaryGeneric(vector< string > &strs)

virtual bool EndElement(const std::string &name)

bool error(const string &message)

bool start_element(const string &name, const attrs_type &attrs)

bool PathSuffixIs(const char *suffix)

bool TryQuery(string query)

virtual bool StartElement(const std::string &name)

bool warning(const string &message)

bool end_element(const string &name)

virtual bool Text(const std::string &contents)

bool text(const string &contents)

virtual void SeqEntryInitialize(CRef< CSeq_entry > &se)

void ProcessInitialize(const CArgs &args)

virtual void SeqEntryInitialize(CRef< CSeq_entry > &se)

The xml::error_messages class is used to store all the error message which are collected while parsin...

bool has_fatal_errors(void) const

Check if there are fatal errors in the error messages.

bool has_errors(void) const

Check if there are errors in the error messages.

std::string print(void) const

Convert error messages into a single printable string.

The xml::event_parser is used to parse an XML document by calling member functions when certain thing...

std::map< std::string, std::string > attrs_type

a type for holding XML node attributes

bool parse_stream(std::istream &stream, error_messages *messages, warnings_as_errors_type how=type_warnings_not_errors)

Parse what ever data that can be read from the given stream.

Include a standard set of the NCBI C++ Toolkit most basic headers.

This file contains the definition of the xml::event_parser class.

static const char * str(char *buf, int n)

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Error(CExceptionArgs_Base &args)

void Warning(CExceptionArgs_Base &args)

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string URLEncode(const CTempString str, EUrlEncode flag=eUrlEnc_SkipMarkChars)

URL-encode string.

unsigned int

A callback function used to compare two keys in a database.

void SleepSec(unsigned long sec, EInterruptOnSignal onsignal=eRestartOnSignal)

Sleep.

static unsigned char _ToKey[256]

CRef< CPub > journal(ParserPtr pp, char *bptr, char *eptr, CRef< CAuth_list > &auth_list, CRef< CTitle::C_E > &title, bool has_muid, CRef< CCit_art > &cit_art, Int4 er)

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