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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/process__agpwrite_8hpp_source.html below:

NCBI C++ ToolKit: src/app/streamtest/process_agpwrite.hpp Source File

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33 #ifndef __process_agpwrite__hpp__ 34 #define __process_agpwrite__hpp__ 48 void do_map

(

string

&in_out_component_id ) {

49

in_out_component_id =

"PREFIX"

+ in_out_component_id +

"SUFFIX"

;

61

}

else if

(

option

"map"

) {

64 throw

runtime_error(

"unknown process option: "

option

);

81 m_out

= args[

"o"

] ? &(args[

"o"

].AsOutputFile()) : &cout;

103 unsigned long long

num = 0;

106 if

(bioseq.

IsNa

()) {

void AgpWrite(CNcbiOstream &os, const objects::CSeqMap &seq_map, const string &object_id, objects::CScope &scope, const vector< char > &component_types=vector< char >(), CAgpWriteComponentIdMapper *comp_id_mapper=nullptr, int agp_version=2)

Write a SeqMap in AGP format, using provided scope.

void do_map(string &in_out_component_id)

unique_ptr< CTestCompIdMapper > comp_id_mapper

virtual void SeqEntryInitialize(CRef< CSeq_entry > &se)

CAgpwriteProcess(const string &option)

void ProcessInitialize(const CArgs &args)

virtual void SeqEntryInitialize(CRef< CSeq_entry > &se)

CRef< CSeq_entry > m_entry

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Error(CExceptionArgs_Base &args)

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

@ fLabel_Version

Show the version.

@ eContent

Untagged human-readable accession or the like.

CConstRef< CSeq_id > GetSeqId(void) const

Get id which can be used to access this bioseq handle Throws an exception if none is available.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

constexpr bool empty(list< Ts... >) noexcept

#define VISIT_ALL_BIOSEQS_WITHIN_SEQENTRY(Itr, Var)

VISIT_ALL_BIOSEQS_WITHIN_SEQENTRY.

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