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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/primercheck_8hpp.html below:

NCBI C++ ToolKit: include/algo/primer/primercheck.hpp File Reference

primer specificity checking tool More...

#include <objects/seqalign/Seq_align.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <util/itree.hpp>

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Classes struct   SHspInfo   struct   SHspIndex   class   COligoSpecificityTemplate   class   COligoSpecificityCheck   struct   COligoSpecificityCheck::SPrimerInfo   the input primer pair information only the left and right range information is needed by this API More...
  struct   COligoSpecificityCheck::SHspIndexInfo   struct   COligoSpecificityCheck::SPrimerHitInfo   primer hit to the blast dababase More...
  struct   COligoSpecificityCheck::SPrimerMatch   value for coordinate-alignment cache More...
  struct   COligoSpecificityCheck::SAlnCache   key for coordinate-alignment cache More...
  struct   COligoSpecificityCheck::sort_order   strict weak ordering functor More...
  struct   COligoSpecificityCheck::SSlaveRange   struct   COligoSpecificityCheck::slave_range_sort_order   Typedefs typedef pair< vector< SHspInfo * >, vector< SHspInfo * > >  TSortedHsp   Detailed Description

primer specificity checking tool

Definition in file primercheck.hpp.

Typedef Documentation ◆ TSortedHsp typedef pair<vector<SHspInfo*>, vector<SHspInfo*> > TSortedHsp

Definition at line 61 of file primercheck.hpp.

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