Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/polya_8hpp_source.html below:

NCBI C++ ToolKit: include/algo/sequence/polya.hpp Source File

<

Iterator>

<

Iterator>

<

Iterator>

<

Iterator>

max_following_bases = 0);

<

Iterator>

:

;

:

;

:

;

:

;

:

*

;

<

ForwardIterator1,

ForwardIterator2>

ForwardIterator1

(ForwardIterator1 first1, ForwardIterator1 last1,

ForwardIterator2 first2, ForwardIterator2 last2)

ptrdiff_t d1 = last1 - first1;

ptrdiff_t d2 = last2 - first2;

ForwardIterator1 current1 = first1;

ForwardIterator2 current2 = first2;

(current2 != last2) {

(!(*current1 == *current2)) {

(current2 == last2) ? first1 : last1;

<

Iterator>

tail_found.

() ? -1 : tail_found.

();

<

Iterator>

motif1(

);

motif2(

);

Iterator pos = begin;

Iterator uStrmMotif = pos;

(uStrmMotif != end) {

uStrmMotif =

(pos, end, motif1.begin(), motif1.end());

(uStrmMotif == end) {

uStrmMotif =

(pos, end, motif2.begin(), motif2.end());

(uStrmMotif != end) {

(end - uStrmMotif < 16) {

pos = uStrmMotif + 15;

Iterator maxCleavage = (end - pos < 21) ? end : pos + 21;

(pos < maxCleavage) {

aRun = 0;

(++pos; pos < maxCleavage && aRun < 3; ++pos) {

Iterator cleavageSite = pos - aRun;

numA = 0, numOther = 0;

(Iterator p = cleavageSite; p < end; ++p) {

(Iterator p = end - 1;

p >= cleavageSite &&

(end - p) <= max_following_bases+1;

(numOther + numA > 0 &&

((

) numA / (numA+numOther)) > 0.95) {

(cleavageSite - begin, p - begin);

<

Iterator>

cleavageSite = tail.

();

cleavageSite = tail.

();

<

Iterator>

max_following_bases);

seqLen = end - begin;

tail_result.

(seqLen - 1 - tail.

(),

seqLen - 1 - tail.

());

Implementation [in header because of templates].

bool operator!=(const CRevComp_It &it) const

bool operator<(const CRevComp_It &it) const

CRevComp_It & operator-=(int i)

bool operator==(const CRevComp_It &it) const

CRevComp_It operator++(int)

bool operator>=(const CRevComp_It &it) const

CRevComp_It operator--(int)

CRevComp_It(const Iterator &it)

CRevComp_It operator+(int i) const

bool operator>(const CRevComp_It &it) const

CRevComp_It & operator+=(int i)

CRevComp_It & operator--(void)

CRevComp_It operator-(int i) const

char operator*(void) const

bool operator<=(const CRevComp_It &it) const

CRevComp_It & operator++(void)

Include a standard set of the NCBI C++ Toolkit most basic headers.

unsigned int TSeqPos

Type for sequence locations and lengths.

int TSignedSeqPos

Type for signed sequence position.

position_type GetLength(void) const

TThisType & Set(position_type from, position_type to)

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

TSeqRange FindPolyARange(Iterator begin, Iterator end, TSeqPos max_following_bases)

PRE : two random access iterators pointing to sequence data [begin, end); maximum number of non-A bas...

TSignedSeqPos FindPolyA(Iterator begin, Iterator end)

PRE : two random access iterators pointing to sequence data [begin, end) POST: poly-A tail cleavage s...

EPolyTail FindPolyTail(Iterator begin, Iterator end, TSignedSeqPos &cleavageSite, TSeqPos min_length=1)

PRE : two random access iterators pointing to sequence data [begin, end); minimum length for tail POS...

ForwardIterator1 ItrSearch(ForwardIterator1 first1, ForwardIterator1 last1, ForwardIterator2 first2, ForwardIterator2 last2)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4