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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/phylo__tree__query__exec_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/phylo_tree/phylo_tree_query_exec.cpp Source File

macro::CMacroParser::TFunctionNamesList where_funcs, do_funcs;

name = (*cit).first;

(p_func->GetFuncScope()) {

ITreeMacroFunction::eDo:

do_funcs.push_back(name);

ITreeMacroFunction::eWhere:

where_funcs.push_back(name);

do_funcs.push_back(name);

where_funcs.push_back(name);

parser.SetFunctionNames(where_funcs, do_funcs);

(it = fd.

(); it != fd.

(); ++it) {

(*it).second.c_str());

feature_value;

GetFeatureValue(

, feature_value);

feature_value;

GetFeatureValue(

, feature_value);

feature_value;

GetFeatureValue(

, feature_value);

+ name +

, &node);

((

&& func->GetFuncScope() == ITreeMacroFunction::eWhere) ||

(!

&& func->GetFuncScope() == ITreeMacroFunction::eDo))

+ name +

, &node);

, &node);

func->SetNestedState(ITreeMacroFunction::eNested);

func->SetNestedState(ITreeMacroFunction::eNotNested);

(

macro::CMacroDataException &err) {

message(

);

message +=

;

(macro::CMacroExecException &

) {

selected =

;

top_node->

().GetUserObject());

(

<< pe.

());

selected =

;

top_node->

().GetUserObject());

qtree = m.GetDoTree();

(macro::CMacroExecException, eInternalError,

);

.GetPrevFeatures() = node->GetBioTreeFeatureList();

.GetFeatures() = node->GetBioTreeFeatureList();

node_updated =

;

(

.GetPrevFeatures().GetFeatureList().size() !=

.GetFeatures().GetFeatureList().size()) {

node_updated =

;

(

= 0;

<

.GetFeatures().GetFeatureList().

(); ++

) {

(

.GetFeatures().GetFeatureList()[

].id !=

.GetPrevFeatures().GetFeatureList()[

].id ||

.GetFeatures().GetFeatureList()[

].value !=

.GetPrevFeatures().GetFeatureList()[

].value) {

node_updated =

;

(

<< pe.

());

@ eBoth

Both preliminary and traceback stages.

implements special composite command, which does not call to its internal commands when run the very ...

CMacroFunction_AddToSelectionSet.

CMacroFunction_BranchDepth Returns the number of branches between the current node and the root node.

CMacroFunction_CollapseNode Collapses the current node.

CMacroFunction_Date Takes a date/time string as a parameter and returns it as an integer number of se...

CMacroFunction_DeleteNode Deletes the current node.

CMacroFunction_ExpandNode Expands the current node.

CMacroFunction_IsLeaf Returns true if child is a leaf, so you can do queries that exclude non-leaf no...

CMacroFunction_IsNull Returns true of the passed in property is not set at all for the current node.

CMacroFunction_MaxChildBranchDepth Returns the number of branches between the current node and its mo...

CMacroFunction_NumChildren Returns the number of children of the current node so that you can search ...

CMacroFunction_SetBounding Takes one parameter (string) and sets that as the $NODE_BOUNDED property f...

CMacroFunction_SetColor Takes one string parameter and uses it to sets the color for the node to that...

CMacroFunction_SetMarker Takes one parameter (string) and sets that as the marker property for the no...

CMacroFunction_SetProperty Takes a property name (string) and property value (string) and sets or upd...

CMacroFunction_SetSize Takes one integer parameter and uses it to sets the radius for the node to tha...

CMacroFunction_SubtreeSum Calculates the sum of node property (single parameter) of all the nodes tha...

virtual ~CMacroFunction_TopLevel2()

virtual void TheFunction()

CMacroFunction_TopLevel2(EScopeEnum func_scope, CPhyloTree *tree)

void SetMacroRep(macro::CMacroRep *mr)

bool IsUnused() const

Return true the index 'idx' in the array is not currently part of the tree.

Tree subclass also has functions and data needed for rendering and selection.

CPhyloSelectionSetMgr & GetSelectionSets()

TTreeIdx FindNodeById(TID id) const

Return index of the node with the given id or Null().

CBioTreeFeatureDictionary & GetFeatureDict()

Return feature dictionary.

class CQueryExecException

void SetBranchDepth(int bd)

Set/Get number of branches between node and root.

bool GetValue() const

Set boolean result value (result of (sub)expression).

void SetMaxChildBranchDepth(int cbd)

Set/Get number of branches between node and most distant child.

Query tree and associated utility methods.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

TNodeList_CI SubNodeEnd() const

Return const iterator to end of subnode list.

TData & GetValue()

Return the value object for the node.

bool IsLeaf() const

Report whether this is a leaf node.

TNodeType & GetNode(TTreeIdx idx)

Return a reference to the node at the given index.

TNodeType & GetRoot()

Return a reference to the root node of the tree.

TTreeIdx GetRootIdx() const

Return the index of the root node.

definition of a Culling tree

ITreeMacroFunction * x_ResolveFunctionName(const string &name) const

Locates function by name.

virtual bool EvalNext(CQueryParseTree &qtree)

Move to the next row for eval, return false if table size < m_EvalRow+1.

std::stack< PhyloTreePointer > m_NodeStack

stack of visited nodes up the tree

void SetTree(CPhyloTree *t)

Set current node for query execution.

const CBioTreeFeatureDictionary * m_Dictionary

Dictionary of 'features' for the tree.

std::vector< TTreeIdx > m_Selected

current set of selected nodes from the query

TBuiltInFunctionsMap m_BuiltInFunctions

functions

virtual bool HasIdentifier(const std::string &identifier)

Search for 'identifier' in dictionary and return true if it exists.

int m_NodeMaxChildBranchDepth

Number of branches between the current node and it's most distant (by branch count) child.

virtual void GetFunctionNames(macro::CMacroParser &parser) const

void x_EvalAdvance()

Moves to next node for 'EvalNext' functions.

virtual ~CTreeQueryExec()

virtual void CallFunction(const string &name, CQueryParseTree::TNode &node)

Extend this function to look up and invoke functions that appear in the query.

int m_NodeBranchDepth

Depth in tree as an integer - number of branches between current node and root.

bool m_TopologyChange

If true topology changed (e.g. a node was deleted)

bool m_EvalDo

Flag indicates if the work should be performed on the Do clause.

CRef< CSelectionSetEdit > m_SelectionSetEdit

Undo-redo buffer for selection sets (which are stored in biotreecontainer user data)

virtual bool ResolveIdentifier(const std::string &identifier, bool &value)

If query has an identifier, this will resolve it in an application-specific way.

virtual void EvalStart()

Move to the first row for eval, return false if table empty.

TTreeIdx m_EvalNode

Node currently being evaluated.

bool m_DisableUndo

To disable use of undo buffer (m_FeatureEdit)

CRef< CFeatureEdit > m_FeatureEdit

The undo/redo buffer for node properties.

virtual bool EvalComplete()

void x_ClearBuiltInFunctions()

Deletes function objects.

CRef< CMacroCmdComposite > m_CmdComposite

TBioTreeFeatureId GetFeatureIdNoCase(const string &feature_name, const CBioTreeFeatureDictionary *dict) const

Returns id of a registred tree feature based on case-insensitive compare or -1 if feature does not ex...

virtual TFieldID GetIdentifier(const std::string &identifier)

Get biotree feature ID for identifier or return TFieldID(-1)

Base class for functions which can be called from the WHERE or DO clauses of macros/queries using the...

container_type::const_iterator const_iterator

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

const_iterator find(const key_type &key) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define DIAG_COMPILE_INFO

Make compile time diagnostic information object to use in CNcbiDiag and CException.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const string & GetMsg(void) const

Get message string.

void Info(CExceptionArgs_Base &args)

void ThrowCMacroExecException(const CDiagCompileInfo &info, CMacroExecException::EErrCode code, const string &message, const CQueryParseTree::TNode *treeNode, const CException *previous=nullptr)

Throws CMacroExecException with the specified message and error location from the TNode.

void Reset(void)

Reset reference object.

TObjectType & GetObject(void)

Get object.

int64_t Int8

8-byte (64-bit) signed integer

unsigned pos

Position in the src line.

const TNode * GetQueryTree() const

unsigned line

Src line number.

virtual void Evaluate(CQueryParseTree &qtree)

Run query tree evaluation.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool StringToBool(const CTempString str)

Convert string to bool.

static int CompareNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive compare of a substring with another string.

static Int8 StringToInt8(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to Int8.

static double StringToDouble(const CTempStringEx str, TStringToNumFlags flags=0)

Convert string to double.

static string & ToUpper(string &str)

Convert string to upper case – string& version.

unsigned int TBioTreeFeatureId

Feature Id.

const TValue & GetValue(void) const

Return node's value.

const TFeatureDict & GetFeatureDict() const

Get reference on the internal map.

const TTreeType * GetParent(void) const

Get node's parent.

const struct ncbi::grid::netcache::search::fields::SIZE size

const GenericPointer< typename T::ValueType > T2 value

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

Edits for one or more nodes.

vector< CUpdatedFeature > & GetUpdated()

Source location (points to the position in the original src) All positions are 0 based.

Edits for one or more nodes.

CPhyloSelectionSetMgr & GetPrevSet()

for iterating through the node tree without recursion

TNodeType::TNodeList_I m_Iterator

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