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NCBI C++ ToolKit: src/gui/widgets/phylo_tree/phylo_selection_set.cpp Source File

(m_SelectedIDs.begin(), m_SelectedIDs.end());

m_SelectedIDs.erase(std::unique(m_SelectedIDs.begin(), m_SelectedIDs.end()),

(sel_set->

(

) &&

(sel_set->

(

) && sel_set->

(

) && sel_set->

(

) &&

(sel_set->

(

) &&

(sel_set->

(

) &&

(sel_set->

(

) &&

m_SelectedIDs.clear();

(

= 0;

<node_ids.size(); ++

) {

m_SelectedIDs.push_back(node_ids[

]);

uo_id->

(

);

uo_sel_set->

(

, GetName());

uo_sel_set->

(

, GetSelected());

uo_sel_set->

(

, GetClusterID());

vector<int> selected;

(

j = 0; j<GetSelectionSet().size(); ++j)

selected.push_back(

(GetSelectionSet()[j]));

uo_sel_set->

(

, selected);

(

= 0;

< m_SelectionSets.size(); ++

) {

(uo.

(

) &&

m_SelectionSets.resize(sel_sets.size());

(

= 0;

< sel_sets.size(); ++

) {

m_SelectionSets[

].InitFromUserObject(sel_sets[

]);

x_SyncSelectionSets(tree_model);

SetSelectionSetProperty(tree_model);

(uo.

(

)) {

CUser_object::TData::iterator it = uo.

().begin();

(it != uo.

().end()) {

((*it)->IsSetLabel() && (*it)->GetLabel().IsStr() &&

(*it)->GetLabel().GetStr() ==

) {

(m_SelectionSets.size() > 0) {

vector< CRef<CUser_object> > uo_sets;

(

= 0;

< m_SelectionSets.size(); ++

) {

uo_sets.push_back(uo_sel_set);

uo.

(

, uo_sets);

(

& sel_set : m_SelectionSets) {

sel_set.RemoveDuplicateIDs();

(

= 0;

<m_SelectionSets.size(); ++

) {

(m_SelectionSets[

].GetSelected()) {

= m_SelectionSets[

].GetClusterID();

cluster_id_to_selection_map[id] =

;

cluster_id_to_selection_map;

num_nodes = tree_model->

();

(

= 0;

<num_nodes; ++

) {

(

.GetValue().HasSelClusters())

.GetValue().GetSelClusters().clear();

.GetValue().GetBioTreeFeatureList().RemoveFeature(sel_feat_id);

cid =

.GetValue().GetBioTreeFeatureList().GetFeatureValue(cluster_id);

(sel_id || errno == 0)

.GetValue().SetClusterID(cluster_id);

.GetValue().SetClusterColorIdx(-1);

(

.GetValue().HasNodeMarker())

.GetValue().GetMarkerColors().clear();

& marker =

.GetValue().GetBioTreeFeatureList().GetFeatureValue(marker_feat_id);

(!marker.empty()) {

.GetValue().SetMarkerColors(marker);

(std::exception&){}

(

= 0;

<m_SelectionSets.size(); ++

) {

(m_SelectionSets[

].GetSelected()) {

cluster_id = m_SelectionSets[

].GetClusterID();

(

j = 0; j<m_SelectionSets[

].GetSelectionSet().

(); ++j) {

objects::CNode::TId node_id = m_SelectionSets[

].GetSelectionSet()[j];

(sel_clusters.length() > 0)

sel_clusters +=

;

(

= 0;

< m_SelectionSets.size(); ++

) {

(m_SelectionSets[

].GetName() == set_name) {

set_idx = GetSelectionSet(set_name);

(set_idx !=

(-1))

m_SelectionSets[set_idx];

vector<CRgbaColor> current_colors;

max_cluster_id = 500;

(

= 0;

< m_SelectionSets.size(); ++

) {

current_colors.push_back(m_SelectionSets[

].

());

max_cluster_id =

(m_SelectionSets[

].GetClusterID(), max_cluster_id);

vector<objects::CNode::TId> ids;

m_SelectionSets.push_back(new_set);

m_SelectionSets[m_SelectionSets.size() - 1];

set_idx = GetSelectionSet(set_name);

(set_idx !=

(-1))

m_SelectionSets[set_idx];

vector<objects::CNode::TId> ids;

m_SelectionSets.push_back(new_set);

m_SelectionSets[m_SelectionSets.size() - 1];

num_colors = (float)current_colors.size();

color_step = num_colors ? (180.0f / num_colors) : 0;

rotate_angle = color_step + 100.0f;

max_color_dist = 0.0f;

(

= 0;

< 2 * current_colors.size(); ++

) {

(c_dist < 0.7f) {

min_color_dist = 1e10f;

(

j = 0; j < current_colors.size(); ++j) {

(dist < min_color_dist) {

min_color_dist = dist;

(min_color_dist > max_color_dist) {

max_color_dist = min_color_dist;

(

= 0;

<m_SelectionSets.size(); ++

) {

vector<objects::CNode::TId> selected = m_SelectionSets[

].GetSelectionSet();

m_SelectionSets[

].GetSelectionSet().clear();

(

j = 0; j<selected.size(); ++j) {

objects::CNode::TId node_id = selected[j];

m_SelectionSets[

].GetSelectionSet().push_back(node_id);

vector<CPhyloSelectionSet> selection_sets = m_SelectionSets;

m_SelectionSets.clear();

(

= 0;

<selection_sets.size(); ++

) {

(selection_sets[

].GetSelectionSet().

() > 0) {

m_SelectionSets.push_back(selection_sets[

]);

sel_set->SetClusterID(start_id--);

TSelClusterIDs & GetSelClusters()

CBioTreeFeatureList & GetBioTreeFeatureList()

void InitFromUserObject(CPhyloTree *tree_model, const objects::CBioTreeContainer_Base::TUser &uo)

CRgbaColor PickBestColor(const vector< CRgbaColor > &current_colors)

void SetSelectionSetProperty(CPhyloTree *tree_model)

void RenumberClusterIDs(int start_id)

Update all cluster ids using the starting-id as the lowest value.

void SaveToUserObject(objects::CBioTreeContainer_Base::TUser &uo)

size_t GetSelectionSet(const string &set_name)

Returns size_t(-1) if the name set_name is not an existing selection set.

map< int, size_t > GetClusterToSelectionMap()

CPhyloSelectionSet & AddSet(const string &set_name)

Add the new set set_name and return it. If it already exists, just return it.

void RemoveDuplicateIDs()

Remove duplicate IDs from individual sets.

void x_SyncSelectionSets(CPhyloTree *tree_model)

bool operator==(const CPhyloSelectionSetMgr &rhs) const

vector< CPhyloSelectionSet > m_SelectionSets

void SetColor(const CRgbaColor &c)

CRef< objects::CUser_object > SaveToUserObject() const

void SetClusterID(int cid)

CRgbaColor m_SelectionColor

void InitFromUserObject(CRef< objects::CUser_object > sel_set)

vector< objects::CNode::TId > m_SelectedIDs

bool operator==(const CPhyloSelectionSet &rhs) const

call RemoveDuplicateIDs first which sorts and removes dups

void RemoveDuplicateIDs()

remove duplicates form m_SelectedIDs. should be called before operator==

Tree subclass also has functions and data needed for rendering and selection.

TTreeIdx FindNodeById(TID id) const

Return index of the node with the given id or Null().

CBioTreeFeatureDictionary & GetFeatureDict()

Return feature dictionary.

class CRgbaColor provides a simple abstraction for managing colors.

TData & GetValue()

Return the value object for the node.

static TTreeIdx Null()

Return the index value that represents a NULL node.

size_t GetSize() const

Get the number of nodes currently in the array.

TNodeType & GetNode(TTreeIdx idx)

Return a reference to the node at the given index.

bool HasField(const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const

Verify that a named field exists.

CUser_object & AddField(const string &label, const string &value, EParseField parse=eParse_String)

add a data field to the user object that holds a given value

const CUser_field & GetField(const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const

Access a named field in this user object.

CRgbaColor & GetColor(CSeqFeatData::ESubtype subtype)

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

static CRgbaColor RotateColor(const CRgbaColor &c, float degrees)

Rotate the hue of the color by degrees.

static float ColorDistance(const CRgbaColor &c1, const CRgbaColor &c2)

returns the distance in the RGB color cube between the two colors, scaled to a range [0,...

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

@ fConvErr_NoThrow

Do not throw an exception on error.

unsigned int TBioTreeFeatureId

Feature Id.

void SetFeature(TBioTreeFeatureId id, const string &value)

Set feature value, feature if exists replaced, if not added.

TBioTreeFeatureId Register(const string &feature_name)

Register new feature, return its id.

const string & GetFeatureValue(TBioTreeFeatureId id) const

Get feature value by id.

const TStr & GetStr(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

TBool GetBool(void) const

Get the variant data.

bool IsInt(void) const

Check if variant Int is selected.

bool IsStr(void) const

Check if variant Str is selected.

TData & SetData(void)

Assign a value to Data data member.

TInt GetInt(void) const

Get the variant data.

TStr & SetStr(void)

Select the variant.

bool IsInts(void) const

Check if variant Ints is selected.

bool IsObjects(void) const

Check if variant Objects is selected.

TReal GetReal(void) const

Get the variant data.

void SetType(TType &value)

Assign a value to Type data member.

bool IsReal(void) const

Check if variant Real is selected.

bool IsBool(void) const

Check if variant Bool is selected.

const TInts & GetInts(void) const

Get the variant data.

const TObjects & GetObjects(void) const

Get the variant data.

constexpr auto sort(_Init &&init)

const struct ncbi::grid::netcache::search::fields::SIZE size

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