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NCBI C++ ToolKit: include/algo/phy_tree/phy_node.hpp Source File

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: m_Id(-1), m_DistSet(

)

(

)

{

m_Id;}

(

) {m_Id = id;}

(

)

{

m_Dist;}

(

dist) {m_Dist = dist; m_DistSet =

;}

(

) {m_DistSet =

; m_Dist = 0;}

&

(

)

{

m_Label;}

& tree_name =

);

Data contained at each node of a phylogenetic tree.

void SetDist(double dist)

double GetDist(void) const

Return the distance; does NOT check whether it's really set.

bool IsSetDist(void) const

Is the distance set?

void ResetDist(void)

Make it no longer set.

const string & GetLabel(void) const

void SetLabel(const string &label)

definition of a Culling tree

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

#define NCBI_XALGOPHYTREE_EXPORT

static const char label[]

void PrintNode(CNcbiOstream &os, const TPhyTreeNode &node)

Newick but without the terminal ';'.

CNcbiOstream & operator<<(CNcbiOstream &os, const TPhyTreeNode &tree)

Newick format output.

void WriteNexusTree(CNcbiOstream &os, const TPhyTreeNode &tree, const string &tree_name="the_tree")

Nexus format output (Newick with some stuff around it).

CTreeNode< CPhyNodeData > TPhyTreeNode

TPhyTreeNode * ReadNewickTree(CNcbiIstream &is)

Newick format input.

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