ZMapType::const_iterator
i= ZMap.find(
Z);
57 double r,
double g,
double b,
60ZMapType::const_iterator
i=
ZMap.find(
Z);
61 if(
i!=
ZMap.end())
delete const_cast<Element*
>((*i).second);
69 AddElement( 1,
"Hydrogen",
"H", 0.8, 0.8, 0.8, 1.2 );
70 AddElement( 2,
"Helium",
"He", 0.8, 0.37, 0.08, 1.22 );
71 AddElement( 3,
"Lithium",
"Li", 0.7, 0.7, 0.7, 1.52 );
72 AddElement( 4,
"Beryllium",
"Be", 0.8, 0.37, 0.08, 1.7 );
73 AddElement( 5,
"Boron",
"B", 0.9, 0.4, 0, 2.08 );
74 AddElement( 6,
"Carbon",
"C", 0.3, 0.3, 0.3, 1.85 );
75 AddElement( 7,
"Nitrogen",
"N", 0.2, 0.2, 0.8, 1.54 );
76 AddElement( 8,
"Oxygen",
"O", 0.8, 0.2, 0.2, 1.4 );
77 AddElement( 9,
"Fluorine",
"F", 0.7, 0.85, 0.45, 1.35 );
78 AddElement( 10,
"Neon",
"Ne", 0.8, 0.37, 0.08, 1.6 );
79 AddElement( 11,
"Sodium",
"Na", 0.6, 0.6, 0.6, 2.31 );
80 AddElement( 12,
"Magnesium",
"Mg", 0.4, 0.4, 0.4, 1.7 );
81 AddElement( 13,
"Aluminum",
"Al", 0.4, 0.4, 0.4, 2.05 );
82 AddElement( 14,
"Silicon",
"Si", 0.7, 0, 0.1, 2 );
83 AddElement( 15,
"Phosphorus",
"P", 0.1, 0.7, 0.3, 1.4 );
84 AddElement( 16,
"Sulfur",
"S", 0.95, 0.9, 0.2, 1.85 );
85 AddElement( 17,
"Chlorine",
"Cl", 0.15, 0.5, 0.1, 1.81 );
86 AddElement( 18,
"Argon",
"Ar", 0.8, 0.37, 0.08, 1.91 );
87 AddElement( 19,
"Potassium",
"K", 0.8, 0.5, 0.7, 2.31 );
88 AddElement( 20,
"Calcium",
"Ca", 0.8, 0.8, 0.7, 1.973 );
89 AddElement( 21,
"Scandium",
"Sc", 0.5, 0.5, 0.5, 1.7 );
90 AddElement( 22,
"Titanium",
"Ti", 0.5, 0.5, 0.5, 1.7 );
91 AddElement( 23,
"Vanadium",
"V", 0.5, 0.5, 0.5, 1.7 );
92 AddElement( 24,
"Chromium",
"Cr", 0.5, 0.5, 0.5, 1.7 );
93 AddElement( 25,
"Manganese",
"Mn", 0.5, 0.5, 0.5, 1.7 );
94 AddElement( 26,
"Iron",
"Fe", 0.7, 0, 0.1, 1.7 );
95 AddElement( 27,
"Cobalt",
"Co", 0.5, 0.5, 0.5, 1.7 );
96 AddElement( 28,
"Nickel",
"Ni", 0.5, 0.5, 0.5, 1.7 );
97 AddElement( 29,
"Copper",
"Cu", 0.5, 0.5, 0.5, 1.7 );
98 AddElement( 30,
"Zinc",
"Zn", 0.5, 0.5, 0.5, 1.7 );
99 AddElement( 31,
"Gallium",
"Ga", 0.5, 0.5, 0.5, 1.7 );
100 AddElement( 32,
"Germanium",
"Ge", 0.5, 0.5, 0.5, 1.7 );
101 AddElement( 33,
"Arsenic",
"As", 0.4, 0.8, 0.1, 2 );
102 AddElement( 34,
"Selenium",
"Se", 0.8, 0.8, 0.1, 2 );
103 AddElement( 35,
"Bromine",
"Br", 0.5, 0.08, 0.12, 2.1 );
104 AddElement( 36,
"Krypton",
"Kr", 0.8, 0.37, 0.08, 1.7 );
105 AddElement( 37,
"Rubidium",
"Rb", 0.5, 0.5, 0.5, 1.7 );
106 AddElement( 38,
"Strontium",
"Sr", 0.5, 0.5, 0.5, 1.7 );
107 AddElement( 39,
"Yttrium",
"Y", 0.5, 0.5, 0.5, 1.7 );
108 AddElement( 40,
"Zirconium",
"Zr", 0.5, 0.5, 0.5, 1.7 );
109 AddElement( 41,
"Niobium",
"Nb", 0.5, 0.5, 0.5, 1.7 );
110 AddElement( 42,
"Molybdenum",
"Mo", 0.5, 0.5, 0.5, 1.7 );
111 AddElement( 43,
"Technetium",
"Tc", 0.5, 0.5, 0.5, 1.7 );
112 AddElement( 44,
"Ruthenium",
"Ru", 0.5, 0.5, 0.5, 1.7 );
113 AddElement( 45,
"Rhodium",
"Rh", 0.5, 0.5, 0.5, 1.7 );
114 AddElement( 46,
"Palladium",
"Pd", 0.5, 0.5, 0.5, 1.7 );
115 AddElement( 47,
"Silver",
"Ag", 0.5, 0.5, 0.5, 1.7 );
116 AddElement( 48,
"Cadmium",
"Cd", 0.5, 0.5, 0.5, 1.7 );
117 AddElement( 49,
"Indium",
"In", 0.5, 0.5, 0.5, 1.7 );
118 AddElement( 50,
"Tin",
"Sn", 0.5, 0.5, 0.5, 1.7 );
119 AddElement( 51,
"Antimony",
"Sb", 0.5, 0.5, 0.5, 2.2 );
120 AddElement( 52,
"Tellurium",
"Te", 0.5, 0.5, 0.5, 2.2 );
121 AddElement( 53,
"Iodine",
"I", 0.5, 0.1, 0.5, 2.15 );
122 AddElement( 54,
"Xenon",
"Xe", 0.5, 0.5, 0.5, 1.7 );
123 AddElement( 55,
"Cesium",
"Cs", 0.5, 0.5, 0.5, 1.7 );
124 AddElement( 56,
"Barium",
"Ba", 0.5, 0.5, 0.5, 1.7 );
125 AddElement( 57,
"Lanthanum",
"La", 0.5, 0.5, 0.5, 1.7 );
126 AddElement( 58,
"Cerium",
"Ce", 0.5, 0.5, 0.5, 1.7 );
127 AddElement( 59,
"Praseodymium",
"Pr", 0.5, 0.5, 0.5, 1.7 );
128 AddElement( 60,
"Neodymium",
"Nd", 0.5, 0.5, 0.5, 1.7 );
129 AddElement( 61,
"Promethium",
"Pm", 0.5, 0.5, 0.5, 1.7 );
130 AddElement( 62,
"Samarium",
"Sm", 0.5, 0.5, 0.5, 1.7 );
131 AddElement( 63,
"Europium",
"Eu", 0.5, 0.5, 0.5, 1.7 );
132 AddElement( 64,
"Gadolinium",
"Gd", 0.5, 0.5, 0.5, 1.7 );
133 AddElement( 65,
"Terbium",
"Tb", 0.5, 0.5, 0.5, 1.7 );
134 AddElement( 66,
"Dysprosium",
"Dy", 0.5, 0.5, 0.5, 1.7 );
135 AddElement( 67,
"Holmium",
"Ho", 0.5, 0.5, 0.5, 1.7 );
136 AddElement( 68,
"Erbium",
"Er", 0.5, 0.5, 0.5, 1.7 );
137 AddElement( 69,
"Thulium",
"Tm", 0.5, 0.5, 0.5, 1.7 );
138 AddElement( 70,
"Ytterbium",
"Yb", 0.5, 0.5, 0.5, 1.7 );
139 AddElement( 71,
"Lutetium",
"Lu", 0.5, 0.5, 0.5, 1.7 );
140 AddElement( 72,
"Hafnium",
"Hf", 0.5, 0.5, 0.5, 1.7 );
141 AddElement( 73,
"Tantalum",
"Ta", 0.5, 0.5, 0.5, 1.7 );
142 AddElement( 74,
"Tungsten",
"W", 0.5, 0.5, 0.5, 1.7 );
143 AddElement( 75,
"Rhenium",
"Re", 0.5, 0.5, 0.5, 1.7 );
144 AddElement( 76,
"Osmium",
"Os", 0.5, 0.5, 0.5, 1.7 );
145 AddElement( 77,
"Iridium",
"Ir", 0.5, 0.5, 0.5, 1.7 );
146 AddElement( 78,
"Platinum",
"Pt", 0.5, 0.5, 0.5, 1.7 );
147 AddElement( 79,
"Gold",
"Au", 0.5, 0.5, 0.5, 1.7 );
148 AddElement( 80,
"Mercury",
"Hg", 0.5, 0.5, 0.5, 1.7 );
149 AddElement( 81,
"Thallium",
"Tl", 0.5, 0.5, 0.5, 1.7 );
150 AddElement( 82,
"Lead",
"Pb", 0.5, 0.5, 0.5, 1.7 );
151 AddElement( 83,
"Bismuth",
"Bi", 0.5, 0.5, 0.5, 1.7 );
152 AddElement( 84,
"Polonium",
"Po", 0.5, 0.5, 0.5, 1.7 );
153 AddElement( 85,
"Astatine",
"At", 0.5, 0.5, 0.5, 1.7 );
154 AddElement( 86,
"Radon",
"Rn", 0.5, 0.5, 0.5, 1.7 );
155 AddElement( 87,
"Francium",
"Fr", 0.5, 0.5, 0.5, 1.7 );
156 AddElement( 88,
"Radium",
"Ra", 0.5, 0.5, 0.5, 1.7 );
157 AddElement( 89,
"Actinium",
"Ac", 0.5, 0.5, 0.5, 1.7 );
158 AddElement( 90,
"Thorium",
"Th", 0.5, 0.5, 0.5, 1.7 );
159 AddElement( 91,
"Protactinium",
"Pa", 0.5, 0.5, 0.5, 1.7 );
160 AddElement( 92,
"Uranium",
"U", 0.5, 0.5, 0.5, 1.7 );
161 AddElement( 93,
"Neptunium",
"Np", 0.5, 0.5, 0.5, 1.7 );
162 AddElement( 94,
"Plutonium",
"Pu", 0.5, 0.5, 0.5, 1.7 );
163 AddElement( 95,
"Americium",
"Am", 0.5, 0.5, 0.5, 1.7 );
164 AddElement( 96,
"Curium",
"Cm", 0.5, 0.5, 0.5, 1.7 );
165 AddElement( 97,
"Berkelium",
"Bk", 0.5, 0.5, 0.5, 1.7 );
166 AddElement( 98,
"Californium",
"Cf", 0.5, 0.5, 0.5, 1.7 );
167 AddElement( 99,
"Einsteinium",
"Es", 0.5, 0.5, 0.5, 1.7 );
168 AddElement( 100,
"Fermium",
"Fm", 0.5, 0.5, 0.5, 1.7 );
169 AddElement( 101,
"Mendelevium",
"Md", 0.5, 0.5, 0.5, 1.7 );
170 AddElement( 102,
"Nobelium",
"No", 0.5, 0.5, 0.5, 1.7 );
171 AddElement( 103,
"Lawrencium",
"Lr", 0.5, 0.5, 0.5, 1.7 );
172 AddElement( 254,
"other",
"?", 0.4, 0.4, 0.4, 1.6 );
173 AddElement( 255,
"unknown",
"?", 0.4, 0.4, 0.4, 1.6 );
178ZMapType::const_iterator
i, ie =
ZMap.end();
179 for(
i=
ZMap.begin();
i!=ie; ++
i)
180 if((*i).second)
delete const_cast<Element*
>((*i).second);
~PeriodicTableClass(void)
void AddElement(int Z, const char *name, const char *symbol, double r, double g, double b, double vdW)
Include a standard set of the NCBI C++ Toolkit most basic headers.
#define END_SCOPE(ns)
End the previously defined scope.
#define BEGIN_SCOPE(ns)
Define a new scope.
#define Z
printf format modifier for size_t
double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)
PeriodicTableClass PeriodicTable
int g(Seg_Gsm *spe, Seq_Mtf *psm, Thd_Gsm *tdg)
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