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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/perf__view_8cpp_source.html below:

NCBI C++ ToolKit: src/check/perf_view/perf_view.cpp Source File

56 void ProcessLine

(

const char

* line,

const string

& file_ext);

63 bool

is_header =

false

);

73 virtual void Init

(

void

);

74 virtual int Run

(

void

);

87

arg_desc->SetUsageContext(

GetArguments

().GetProgramBasename(),

88 "Compose summary of 'check.sh.log' files"

);

94

(

"nocolor"

"Do not use JIRA colors"

);

100 "Files to process: list of extensions (as in 'perf_view.EXT')"

120 for

(

size_t

extra = 1; extra <= args.

GetNExtra

(); extra++) {

133

ifstream

file

(

"perf_view."

+ file_ext);

134 if

( !

file

.good() )

135 throw

runtime_error(

"Error opening file perf_view."

+ file_ext);

137 while

(

file

.good() ) {

140 file

.getline(line,

sizeof

(line));

146 throw

runtime_error(

"Error reading file perf_view."

+ file_ext);

165

name = re.

Extract

(

"] [^(]*"

);

178 string

ids = re.

Extract

(

"[^ ]*$"

);

184 string

threads = re.

Extract

(

"[^ ]*$"

);

185 if

( threads.empty() )

192

loader = re.

Extract

(

"[^ ]*$"

);

193 if

(loader ==

"gb"

) {

198

}

else if

(loader ==

"psg"

) {

216 string

bulk = re.

Extract

(

"[^ ]*$"

);

217 if

(bulk ==

"bioseq"

)

219 else if

(bulk ==

"data"

)

224

name = ids +

"/"

+ threads +

"/"

split

;

226

name = name +

","

+ bulk;

230 if

(loader ==

"UNK"

)

243 string

xtime = re.

Extract

(

"[^ ]*$"

);

247

os << setprecision(dtime < 100.0 ? 2 : 3) << dtime;

252 m_Results

[file_ext][loader][name] = stime;

265 static size_t

color_counter = 0;

266 static const

vector<string> kColors =

267

{

"black"

"red"

"blue"

"green"

268 "orange"

"pink"

"brown"

"purple"

};

270

m_Colors[

color

] = kColors[color_counter++ % kColors.size()];

273 if

(

value

"abs"

)

276 string

x_value =

value

;

278

&& x_value.find_first_not_of(

"0123456789. *"

) != string::npos)

279

x_value =

"*"

+ x_value +

"*"

;

281 return "{color:"

+ m_Colors[

color

] +

"}"

+ x_value +

"{color}"

;

289 if

(

GetArgs

()[

"nocolor"

] ) {

290

cout << R

"delimiter( 291 CXYZ = client "C" against server + "PSG-X.Y.Z" 293 * 'T' - contemporary TRUNK 294 * 'S' - latest SC in SVN 295 * 'P' - contemporary full production build 296 * 'O' - previous full production build 300

cout << R

"delimiter( 301 {{{color:blue}*C*{color}{color:red}*XYZ*{color}}} = client {color:blue}{{*C*}}{color} against server + {{PSG-{color:red}*X.Y.Z*{color}}}, _where_ {color:blue}{{*C*}}{color}: 302 * '{color:blue}{{T}}{color}' - contemporary TRUNK 303 * '{color:blue}{{S}}{color}' - latest SC in SVN 304 * '{color:blue}{{P}}{color}' - contemporary full production build 305 * '{color:blue}{{O}}{color}' - previous full production build 311 For the special case of OBJMGR_PERF_TEST the test name is decomposed and then 312 converted into a shorter form "IDs/Threads/Parameters" -- where: 313 * *IDs*: file of seq-ids 314 * *Thr*: number of threads (if specified) 315 * *Par*: N = No-Split, S = Split; BD = Bulk-Data, BB = Bulk-Bioseq 317 Minimum time/s for each run are highlighted in *bold*. 319 Average time for each run is shown as "= _*avg*_". 324 vector<TType> loaders = { "PSG"

"OSG"

"PSOS"

"UNK"

};

328

cout <<

" || Name || "

;

330

cout <<

" || IDs/Thr/Par || "

;

332 size_t

loader_idx = 0;

333 for

(

const string

& loader : loaders) {

334 if

( ( print_unk && loader !=

"UNK"

)

335

|| (!print_unk && loader ==

"UNK"

))

338 bool

loader_empty =

true

;

340 for

(

const auto

& x_loader : x_run.second) {

341 if

(x_loader.first != loader || x_loader.second.empty())

343

loader_empty =

false

;

349 if

( loader_empty ) {

350

loaders[loader_idx].erase();

357

cout <<

"*_"

<< loader <<

"_*\n"

;

359

cout <<

ColorMe

(run.first, run.first,

true

) <<

" "

;

367 if

( ( print_unk && !

m_NameAttr

[name].has_unknown)

368

|| (!print_unk && !

m_NameAttr

[name].has_special) )

371

cout <<

" | "

<< name <<

" | "

;

372 for

(

const string

& loader : loaders) {

373 if

( ( print_unk && loader !=

"UNK"

)

374

|| (!print_unk && loader ==

"UNK"

))

377 if

( loader.empty() )

381 string

min_stime =

" "

;

384 double

avg_time = {};

390 if

(dtime < min_dtime) {

392

min_stime =

m_Results

[run.first][loader][name];

401 bool

has_non_abs_values =

false

;

407 string

& time =

m_Results

[run.first][loader][name];

411

has_non_abs_values =

true

;

412 if

(n_time > 1 && time == min_stime)

413

time =

"*"

+ time +

"*"

;

415

ostr <<

ColorMe

(time, run.first);

417 if

( has_non_abs_values ) {

419 if

(n_time > 1 && avg_time) {

422

ostr << setprecision(avg_time < 100.0 ? 2 : 3) << avg_time;

423

cout <<

" = _*"

ColorMe

(ostr.str(),

"AVERAGE"

) <<

"*_"

;

void ProcessFile(const string &file_ext)

map< TName, TTime > TNameTime

virtual void Init(void)

Initialize the application.

void PrintResult(bool print_unk)

map< TName, SNameAttr > m_NameAttr

virtual int Run(void)

Run the application.

void ProcessLine(const char *line, const string &file_ext)

string ColorMe(const string &value, const TSetup &color, bool is_header=false)

map< TSetup, TRun > TResults

map< TType, TNameTime > TRun

iterator_bool insert(const value_type &val)

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static const char * str(char *buf, int n)

virtual const CArgs & GetArgs(void) const

Get parsed command line arguments.

int AppMain(int argc, const char *const *argv, const char *const *envp=0, EAppDiagStream diag=eDS_Default, const char *conf=NcbiEmptyCStr, const string &name=NcbiEmptyString)

Main function (entry point) for the NCBI application.

virtual void SetupArgDescriptions(CArgDescriptions *arg_desc)

Setup the command line argument descriptions.

const CNcbiArguments & GetArguments(void) const

Get the application's cached unprocessed command-line arguments.

size_t GetNExtra(void) const

Get the number of unnamed positional (a.k.a. extra) args.

@ eString

An arbitrary string.

string Extract(CTempStringEx pattern, CRegexp::TCompile compile_flags=CRegexp::fCompile_default, CRegexp::TMatch match_flags=CRegexp::fMatch_default, size_t pattern_idx=0)

Get matching pattern/subpattern from string.

void Reset(CTempString str)

Reset the content of the string to process.

static CTempString TruncateSpaces_Unsafe(const CTempString str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static double StringToDouble(const CTempStringEx str, TStringToNumFlags flags=0)

Convert string to double.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

@ fConvErr_NoThrow

Do not throw an exception on error.

constexpr bool empty(list< Ts... >) noexcept

const GenericPointer< typename T::ValueType > T2 value

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

Defines command line argument related classes.

Defines unified interface to application:

void split(std::vector< std::string > *strVec, const std::string &str_, const std::string &split_)

int NcbiSys_main(int argc, ncbi::TXChar *argv[])

C++ wrappers for the Perl-compatible regular expression (PCRE) library.

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