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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/orggeneral__panel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/edit/orggeneral_panel.cpp Source File

47 #include <wx/stattext.h> 48 #include <wx/textctrl.h> 49 #include <wx/choice.h> 87

wxWindowID

id

const

wxPoint& pos,

const

wxSize&

size

long

style )

88

: m_CmdProcessor(cmdproc), m_Seh(seh)

102

SetExtraStyle(wxWS_EX_VALIDATE_RECURSIVELY);

103

wxPanel::Create( parent,

id

, pos,

size

, style );

108

GetSizer()->SetSizeHints(

this

);

152

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

153

itemPanel1->SetSizer(itemBoxSizer2);

155

wxFlexGridSizer* itemFlexGridSizer1 =

new

wxFlexGridSizer(0, 2, 0, 0);

156

itemBoxSizer2->Add(itemFlexGridSizer1, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

158

wxStaticText* itemStaticText2 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"Organism*"

), wxDefaultPosition, wxDefaultSize, 0 );

159

itemFlexGridSizer1->Add(itemStaticText2, 0, wxALIGN_RIGHT|wxALIGN_CENTER_VERTICAL|wxALL, 5);

162 m_Taxname

new

wxTextCtrl(itemPanel1,

ID_ORGTAXNAME

, wxEmptyString, wxDefaultPosition, wxSize(240, -1), 0);

164 m_Taxname

new

wxTextCtrl(itemPanel1,

ID_ORGTAXNAME

, wxEmptyString, wxDefaultPosition, wxSize(270, -1), 0);

166

itemFlexGridSizer1->Add(

m_Taxname

, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

168

wxStaticText* itemStaticText3 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"strain**"

), wxDefaultPosition, wxDefaultSize, 0 );

169

itemFlexGridSizer1->Add(itemStaticText3, 0, wxALIGN_RIGHT|wxALIGN_CENTER_VERTICAL|wxALL, 5);

171 m_Strain

new

wxTextCtrl( itemPanel1,

ID_ORGSTRAIN

, wxEmptyString, wxDefaultPosition, wxDefaultSize, 0 );

172

itemFlexGridSizer1->Add(

m_Strain

, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

174

wxStaticText* itemStaticText4 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"isolate**"

), wxDefaultPosition, wxDefaultSize, 0 );

175

itemFlexGridSizer1->Add(itemStaticText4, 0, wxALIGN_RIGHT|wxALIGN_CENTER_VERTICAL|wxALL, 5);

177 m_Isolate

new

wxTextCtrl( itemPanel1,

ID_ORGISOLATE

, wxEmptyString, wxDefaultPosition, wxDefaultSize, 0 );

178

itemFlexGridSizer1->Add(

m_Isolate

, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

180

wxStaticText* itemStaticText5 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"cultivar**"

), wxDefaultPosition, wxDefaultSize, 0 );

181

itemFlexGridSizer1->Add(itemStaticText5, 0, wxALIGN_RIGHT|wxALIGN_CENTER_VERTICAL|wxALL, 5);

184

itemFlexGridSizer1->Add(

m_Cultivar

, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

186

wxStaticText* itemStaticText6 =

new

wxStaticText(itemPanel1, wxID_STATIC,

(

"breed**"

), wxDefaultPosition, wxDefaultSize, 0);

187

itemFlexGridSizer1->Add(itemStaticText6, 0, wxALIGN_RIGHT | wxALIGN_CENTER_VERTICAL | wxALL, 5);

189 m_Breed

new

wxTextCtrl(itemPanel1,

ID_ORGBREED

, wxEmptyString, wxDefaultPosition, wxDefaultSize, 0);

190

itemFlexGridSizer1->Add(

m_Breed

, 0, wxGROW | wxALIGN_CENTER_VERTICAL | wxALL, 5);

193

itemBoxSizer2->AddStretchSpacer();

195

wxStaticText* itemStaticText7 =

new

wxStaticText(itemPanel1, wxID_STATIC,

(

"**At least one field is required"

), wxDefaultPosition, wxDefaultSize, 0);

196

itemBoxSizer2->Add(itemStaticText7, 0, wxALIGN_RIGHT | wxALL, 5);

263 for

(

auto

& it :

m_Source

->GetOrg().GetOrgname().GetMod()) {

264 if

(it->IsSetSubtype() && it->IsSetSubname()) {

265 auto

subtype = it->GetSubtype();

290

(

COrgName::TMod

& orgmod_list, COrgName::TMod::iterator it, wxTextCtrl* ctrl,

bool

& changed)

292 if

(ctrl->IsEmpty()) {

293

it = orgmod_list.erase(it);

297

(*it)->SetSubname(

ToStdString

(ctrl->GetValue()));

307 bool

any_change =

false

;

314 if

(taxname.empty()) {

323 else if

(!taxname.empty()) {

328 bool

found_strain =

false

;

329 bool

found_isolate =

false

;

330 bool

found_cultivar =

false

;

331 bool

found_breed =

false

;

333 auto

& orgmodlist = org.

SetOrgname

().SetMod();

334 auto mod

= orgmodlist.begin();

335 while

(

mod

!= orgmodlist.end()) {

336 if

((*mod)->IsSetSubtype() && (*mod)->IsSetSubname()) {

337 auto

subtype = (*mod)->GetSubtype();

340

found_strain =

true

;

344

found_isolate =

true

;

348

found_cultivar =

true

;

365 if

(!found_strain && !

m_Strain

->IsEmpty()) {

369 if

(!found_isolate && !

m_Isolate

->IsEmpty()) {

373 if

(!found_cultivar && !

m_Cultivar

->IsEmpty()) {

377 if

(!found_breed && !

m_Breed

->IsEmpty()) {

383 if

(any_change && orgmodlist.empty()) {

424 bool

any_changes =

false

;

426 bool

taxname_changed =

false

;

436 if

(taxname_changed) {

441 if

(!di->

Equals

(*cpy)) {

443 cmd

->AddCommand(*chg);

455 cmd

->AddCommand(*cmdAddDesc);

457

taxname_changed =

true

;

465 if

(taxname_changed) {

480 text

"Organism\n"

;

483 text

"At least one field is required: strain, isolate, cultivar, breed\n"

;

const string & GetTaxname(void) const

bool IsSetLineage(void) const

bool IsSetTaxname(void) const

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

bool x_ApplyChangesToSource(objects::CBioSource &src)

bool Create(wxWindow *parent, wxWindowID id=ID_CORGGENERALPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

Creation.

void CreateControls()

Creates the controls and sizers.

virtual void ApplyCommand()

static bool ShowToolTips()

Should we show tooltips?

virtual bool TransferDataToWindow()

void Init()

Initialises member variables.

objects::CSeq_entry_Handle m_Seh

virtual bool TransferDataFromWindow()

virtual void ReportMissingFields(string &text)

ICommandProccessor * m_CmdProcessor

void ApplyBioSource(objects::CBioSource &src)

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

~COrgGeneralPanel()

Destructor.

bool x_HasTaxnameChanged(const objects::CBioSource &orig_src, const objects::CBioSource &edited_src)

COrgGeneralPanel()

Constructors.

CRef< objects::CBioSource > m_Source

@OrgMod.hpp User-defined methods of the data storage class.

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

const string & GetMsg(void) const

Get message string.

void CleanupForTaxnameChange(CObjectInfo oi)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

virtual bool Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const

Check if both objects contain the same values.

TClass GetClass(void) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

bool IsSetClass(void) const

CSeq_entry_Handle GetSeq_entry_Handle(void) const

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EqualCase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-sensitive equality of a substring with another string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

void SetOrg(TOrg &value)

Assign a value to Org data member.

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

void ResetTaxname(void)

Reset Taxname data member.

void SetTaxname(const TTaxname &value)

Assign a value to Taxname data member.

list< CRef< COrgMod > > TMod

bool IsSetTaxname(void) const

preferred formal name Check if a value has been assigned to Taxname data member.

void SetOrgname(TOrgname &value)

Assign a value to Orgname data member.

@ eClass_nuc_prot

nuc acid and coded proteins

const TSource & GetSource(void) const

Get the variant data.

TSource & SetSource(void)

Select the variant.

@ e_Source

source of materials, includes Org-ref

@ eMol_na

just a nucleic acid

static void text(MDB_val *v)

constexpr bool empty(list< Ts... >) noexcept

const struct ncbi::grid::netcache::search::fields::SIZE size

COrgName::TMod::iterator s_UpdateSubtype(COrgName::TMod &orgmod_list, COrgName::TMod::iterator it, wxTextCtrl *ctrl, bool &changed)

CRef< CCmdComposite > TaxonomyLookupCommand(objects::CSeq_entry_Handle seh)

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

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