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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/orgadvanced__panel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/edit/orgadvanced_panel.cpp Source File

51 #include <wx/scrolwin.h> 52 #include <wx/stattext.h> 71 if

(

== objects::COrgMod::eSubtype_old_lineage ||

72 st

== objects::COrgMod::eSubtype_old_name ||

73 st

== objects::COrgMod::eSubtype_other) {

76 return

objects::COrgMod::IsDiscouraged(

true

);

89 if

(

>= objects::CSubSource::eSubtype_fwd_primer_seq &&

<= objects::CSubSource::eSubtype_rev_primer_name) {

92 if

(

== objects::CSubSource::eSubtype_plasmid_name ||

93 st

== objects::CSubSource::eSubtype_chromosome ||

94 st

== objects::CSubSource::eSubtype_other) {

97 return

objects::CSubSource::IsDiscouraged(

);

139

objects::CSeq_entry_Handle seh,

140

wxWindowID

id

const

wxPoint& pos,

const

wxSize&

size

long

style )

141

: m_CmdProcessor(cmdproc), m_Seh(seh)

155

SetExtraStyle(wxWS_EX_VALIDATE_RECURSIVELY);

156

wxPanel::Create( parent,

id

, pos,

size

, style );

161

GetSizer()->SetSizeHints(

this

);

202

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

203

itemPanel1->SetSizer(itemBoxSizer2);

205

itemBoxSizer2->Add(5, 5, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

207

wxFlexGridSizer* itemFlexGridSizer2 =

new

wxFlexGridSizer(0, 1, 0, 0);

208

itemBoxSizer2->Add(itemFlexGridSizer2, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 0);

210

wxBoxSizer* itemBoxSizer3 =

new

wxBoxSizer(wxHORIZONTAL);

211

itemFlexGridSizer2->Add(itemBoxSizer3, 0, wxALIGN_LEFT|wxALIGN_CENTER_VERTICAL|wxALL, 5);

213

wxStaticText* itemStaticText5 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"Attribute name"

), wxDefaultPosition, wxDefaultSize, 0 );

214

itemBoxSizer3->Add(itemStaticText5, 0, wxALIGN_LEFT |wxALL, 5);

217

itemBoxSizer3->Add(60, 5, 0, wxALIGN_CENTER_VERTICAL | wxALL, 5);

218 #elif __WXOSX_COCOA__ 219

itemBoxSizer3->Add(80, 5, 0, wxALIGN_CENTER_VERTICAL | wxALL, 5);

221

itemBoxSizer3->Add(95, 5, 0, wxALIGN_CENTER_VERTICAL | wxALL, 5);

223

wxStaticText* itemStaticText7 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"Attribute value"

), wxDefaultPosition, wxDefaultSize, 0 );

224

itemBoxSizer3->Add(itemStaticText7, 0, wxALIGN_LEFT |wxALL, 5);

227

itemFlexGridSizer2->Add(

m_ScrolledWindow

, 0, wxALIGN_LEFT |wxALIGN_CENTER_VERTICAL|wxALL, 5);

230 m_Sizer

new

wxFlexGridSizer(0, 2, 0, 0);

233

wxHyperlinkCtrl* itemHyperlinkCtrl2 =

new

wxHyperlinkCtrl( itemPanel1,

ID_ORGADVHYPERLINK

(

"Add another attribute"

), wxEmptyString, wxDefaultPosition, wxDefaultSize, wxHL_DEFAULT_STYLE );

234

itemFlexGridSizer2->Add(itemHyperlinkCtrl2, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

252 m_Sizer

->Add(

row

, 0, wxALIGN_LEFT | wxALIGN_CENTER_VERTICAL | wxALL, 0);

254

itemHyperLink->SetVisitedColour(itemHyperLink->GetNormalColour());

255 m_Sizer

->Add(itemHyperLink, 0, wxALIGN_CENTER_VERTICAL | wxLEFT | wxRIGHT, 0);

261 int

row_width, row_height;

262 row

->GetClientSize(&row_width, &row_height);

264 int

link_width, link_height;

265

itemHyperLink->GetClientSize(&link_width, &link_height);

266 if

(link_height > row_height) {

267

row_height = link_height;

269

row_width += link_width;

340

wxWindow *win =

dynamic_cast<

wxWindow*

>

(

event

.GetEventObject());

345 for

(wxWindowList::iterator child = children.begin(); child != children.end(); ++child)

349

wxSizer *sizer = win->GetContainingSizer();

381 size_t

num_rows_needed = 0;

382 size_t

num_subsrc = 0;

383 size_t

num_orgmod = 0;

387 for

(

auto

it :

m_Source

->GetSubtype()) {

388 if

(it->IsSetSubtype() &&

390

(objects::CSubSource::NeedsNoText(it->GetSubtype())

395

num_rows_needed += num_subsrc;

398 for

(

auto

it :

m_Source

->GetOrg().GetOrgname().GetMod()) {

399 if

(it->IsSetSubtype() &&

405

num_rows_needed += num_orgmod;

417 while

(num_rows < num_rows_needed) {

423 auto

rit = children.begin();

424 auto

end = children.end();

426 if

(num_subsrc > 0) {

427 for

(

auto

it :

m_Source

->GetSubtype()) {

428 if

(it->IsSetSubtype() &&

430

(objects::CSubSource::NeedsNoText(it->GetSubtype())

437 string value

= it->IsSetName() ? it->GetName() :

"TRUE"

;

443 if

(num_orgmod > 0) {

444 for

(

auto

it :

m_Source

->GetOrg().GetOrgname().GetMod()) {

445 if

(it->IsSetSubtype() &&

464

wxSizer *sizer =

row

->GetContainingSizer();

467

(*current)->Destroy();

477 for

(

size_t

index = 0; index <

m_Rows

; ++index) {

490 if

(objects::CSubSource::IsValidSubtypeName(

label

)) {

491 auto

subtype = objects::CSubSource::GetSubtypeValue(

label

);

492

rval = objects::CSubSource::NeedsNoText(subtype);

500 if

(objects::CSubSource::IsValidSubtypeName(name)) {

501 auto

subtype = objects::CSubSource::GetSubtypeValue(name);

503

src.SetSubtype().push_back(subsrc);

505 else if

(objects::COrgMod::IsValidSubtypeName(name)) {

506 auto

subtype = objects::COrgMod::GetSubtypeValue(name);

508

src.SetOrg().SetOrgname().SetMod().push_back(org_mod);

535

original->Assign(src);

537 if

(src.IsSetSubtype()) {

538 auto

it = src.SetSubtype().begin();

539 while

(it != src.SetSubtype().end()) {

541

it = src.SetSubtype().erase(it);

547 if

(src.IsSetOrg() && src.GetOrg().IsSetOrgname() && src.GetOrg().GetOrgname().IsSetMod()) {

548 auto

& mods = src.SetOrg().SetOrgname().SetMod();

549 auto

it = mods.begin();

550 while

(it != mods.end()) {

575 if

(src.IsSetSubtype() && src.GetSubtype().empty()) {

578 if

(src.IsSetOrg() && src.GetOrg().IsSetOrgname() &&

579

src.GetOrg().GetOrgname().IsSetMod() &&

580

src.GetOrg().GetOrgname().GetMod().empty()) {

581

src.SetOrg().SetOrgname().ResetMod();

583 return

!original->Equals(src);

600

new_desc->SetSource();

603 if

(new_desc->GetSource().Equals(*

m_Source

))

607 bool

any_changes =

false

;

609 for

(objects::CBioseq_CI bi(

m_Seh

, objects::CSeq_inst::eMol_na); bi; ++bi) {

610

objects::CSeqdesc_CI di(*bi, objects::CSeqdesc::e_Source);

616 if

(!di->Equals(*cpy)) {

618 cmd

->AddCommand(*chg);

625

cpy->Assign(*new_desc);

626 auto

entry = bi->GetParentEntry();

627

objects::CBioseq_set_Handle parent = bi->GetParentBioseq_set();

628 if

(parent && parent.IsSetClass() && parent.GetClass() == objects::CBioseq_set::eClass_nuc_prot)

629

entry = parent.GetParentEntry();

631 cmd

->AddCommand(*cmdAddDesc);

static string GetSubtypeName(const CSubSource &qual)

virtual bool DoNotListOrgMod(int st)

COrgAdvancedMod(wxWindow *parent, SModData mod_data)

virtual bool DoNotListSubSrc(int st)

CRef< objects::CBioSource > m_Source

virtual bool TransferDataFromWindow()

void CreateControls()

Creates the controls and sizers.

static bool ShowToolTips()

Should we show tooltips?

bool x_ApplyChangesToSource(objects::CBioSource &src)

void x_SetBioSourceModifier(objects::CBioSource &src, const string &name, const string &value)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

bool Create(wxWindow *parent, wxWindowID id=ID_CORGADVANCEDPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

Creation.

wxScrolledWindow * m_ScrolledWindow

virtual bool TransferDataToWindow()

COrgAdvancedPanel()

Constructors.

objects::CSeq_entry_Handle m_Seh

~COrgAdvancedPanel()

Destructor.

ICommandProccessor * m_CmdProcessor

void Init()

Initialises member variables.

void OnDeleteQualifier(wxHyperlinkEvent &event)

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void OnAddAttributeHyperlinkClicked(wxHyperlinkEvent &event)

wxEVT_COMMAND_HYPERLINK event handler for ID_ORGADVHYPERLINK

void x_AddRowToWindow(wxWindow *row)

wxFlexGridSizer * m_Sizer

void ApplyBioSource(objects::CBioSource &src)

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

static DLIST_TYPE *DLIST_NAME() prev(DLIST_LIST_TYPE *list, DLIST_TYPE *item)

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static const char label[]

const struct ncbi::grid::netcache::search::fields::SIZE size

const GenericPointer< typename T::ValueType > T2 value

bool s_DoNotListSubSrc(int st)

bool s_DoEraseOrgMod(objects::COrgMod::TSubtype subtype)

bool s_DoEraseSubSource(objects::CSubSource::TSubtype subtype)

static bool s_IsNonText(const string &label)

bool s_DoNotListOrgMod(int st)

static SLJIT_INLINE sljit_ins st(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

#define row(bind, expected)

string ToStdString(const wxString &s)

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