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NCBI C++ ToolKit: src/gui/core/open_view_manager_impl.cpp Source File

53 #include <wx/statline.h> 54 #include <wx/valgen.h> 56 #include <wx/stattext.h> 57 #include <wx/checkbox.h> 58 #include <wx/msgdlg.h> 59 #include <wx/bitmap.h> 106

: m_OneViewPerObject(

false

)

112  return

wxPanel::Create( parent,

id

, pos,

size

, style );

143

TransferDataFromWindow();

160

TransferDataToWindow();

216

: m_Factory( factory )

255

GetSizer()->SetSizeHints(

this

);

281

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

282

itemPanel1->SetSizer(itemBoxSizer2);

285

itemBoxSizer2->Add(

m_ListPanel

, 1, wxGROW|wxALL, 5);

288

itemBoxSizer2->Add(

m_GroupCtrl

, 1, wxGROW|wxALL, 5);

290  m_GroupCheckBox

=

new

wxCheckBox( itemPanel1,

ID_GROUPVIEW

,

_

(

"Group objects by identifying sequences"

), wxDefaultPosition, wxDefaultSize, 0 );

292

itemBoxSizer2->Add(

m_GroupCheckBox

, 0, wxALIGN_LEFT|wxLEFT|wxBOTTOM, 5);

311  if

( event.IsChecked() ){

340  if

(objs.

begin

()->second->GetNumRows() > 0) {

350  columns

.push_back(

wxT

(

"Objects/groups"

) );

368  size_t

num_objects =

objects

->GetNumRows();

370  m_Groups

.resize( num_objects, -1 );

373

vector<CScope*> loc_scopes, aln_scopes;

378  for

(

size_t

ix = 0; ix < num_objects; ix++ ){

395  if

( it != find_map.

end

() ){

401

loc_scopes.push_back( scope );

411  if

( num_seqs <= 0 ){

416  for

(

int

q = 0; q < num_seqs; q++ ){

423

vector< set<CSeq_id_Handle> >::iterator found =

431

aln_scopes.push_back( scope );

485  for

(

size_t

ix = 0; ix < num_objects; ix++ ){

520  size_t

num_objects =

objects

->GetNumRows();

522

vector<int> rows_selected;

525  for

(

size_t row

= 0;

row

< rows_selected.size();

row

++ ){

526  int

ix = rows_selected[

row

];

529  for

(

size_t i

= 0;

i

< num_objects;

i

++ ){

533  buf

.push_back(s_obj);

543  for

(

size_t i

= 0;

i

< num_objects;

i

++) {

544  if

(

int

(

m_Groups

[

i

] - num_objects) == ix) {

547  buf

.push_back(s_obj);

556  for

(

size_t i

= 0;

i

< num_objects;

i

++ ){

560  buf

.push_back(s_obj);

572  return

( !

buf

.empty());

588  size_t

num_objects =

objects

->GetNumRows();

590

vector<int> rows_selected;

593  for

(

size_t row

= 0;

row

< rows_selected.size();

row

++ ){

594  int

ix = rows_selected[

row

];

597  for

(

size_t i

= 0;

i

< num_objects;

i

++ ){

609  for

(

size_t i

= 0;

i

< num_objects;

i

++ ){

610  if

(

int

(

m_Groups

[

i

] - num_objects) == ix ){

622  return

!

buf

.empty();

664

, m_Descriptor(

NULL

)

670

: m_Factory( &factory )

671

, m_Descriptor( &factory.GetProjectViewTypeDescriptor() )

760  return

action ==

eNext

;

774  if

(it !=

objects

.end() && it->second->GetNumRows() == 1)

return false

;

777

(

objects

.size() == 1 &&

objects

.begin()->second->GetNumRows() > 1)) {

780

}

else if

(

objects

.begin()->second->GetNumRows() == 1 ){

811 #define MAX_NUM_VIEWS_SAFE 10 825  if

( object_map.

empty

() || object_map.

begin

()->second->GetNumRows() == 0 ){

827  wxT

(

"The selections can't be opened in the selected view!"

),

828  wxT

(

"Open View"

), wxOK | wxICON_EXCLAMATION

853  if

(it == object_map.

end

()) it = object_map.

begin

();

856  int

num_objects =

objects

->GetNumRows();

857  for

(

int

idx = 0; idx < num_objects; ++idx ){

868  wxT

(

"The input object is not compatible with the selected view."

),

869  wxT

(

"Open View"

), wxOK | wxICON_EXCLAMATION

875  wxT

(

"Particular kind of this input object is not supported:\n"

)

877  wxT

(

"Open View"

), wxOK | wxICON_EXCLAMATION

885  if

( action ==

eNext

){

888  wxT

(

"Please select at least one object."

),

889  wxT

(

"Open View"

), wxOK | wxICON_EXCLAMATION

901

vector<int>::iterator found = find(

m_OutputIndices

.begin(), ix_trv, *ix_trv );

903  if

( found == ix_trv ){

912  string

message =

"You are about to open more than "

;

914

message +=

" views at a time.\nAre you sure?"

;

928

}

else if

( action ==

eBack

){

944  wxT

(

"Doing object conversion..."

));

946  NCBI_CATCH

(

"COpenViewManager::x_DoConversion"

);

953  return

loc1->

Compare

(*loc2) < 0;

969  if

(need_extra_col) {

973

need_extra_col =

false

;

981  CScope

* scope =

const_cast<CScope

*

>

(

i

.scope.GetPointer());

982  if

(!scope || !obj)

continue

;

993

loc_map[idh].insert(loc);

1003  CScope

* scope =

const_cast<CScope

*

>

(

i

.scope.GetPointer());

1004  if

(!scope || !obj)

continue

;

1015  if

(relations.size() > 1 && itr == relations.begin())

continue

;

1024

converts.reserve(related.size());

1028  const CObject

* converted_obj = &obj_iter->GetObject();

1030  if

( obj_ptrs.

insert

( converted_obj ).second ){

1035  if

( !loc_map[idh].insert(loc).second ) {

1041

converts.push_back(*obj_iter);

1046  if

( !converts.empty() ){

1050  if

(need_extra_col) {

1055  int

row_num = obj_list->

AddRow

(

const_cast<CObject

*

>

(obj_iter->GetObjectPtr()), scope);

1056  if

(need_extra_col) {

1057

obj_list->

SetString

( 0, row_num, obj_iter->GetComment() );

EVT_CHECKBOX(ID_CADJUSTFEATURES_CHECKBOX, CAdjustFeaturesForGaps::OnKnownUnknownSelected) EVT_CHECKBOX(ID_CADJUSTFEATURES_CHECKBOX1

std::invoke_result< _Fty, ICanceled & >::type GUI_AsyncExec(_Fty &&_Fnarg, const wxString &msg=wxT("Accessing network..."))

virtual void SaveSettings() const

virtual void SetObjects(const TObjectListMap &objs)

add your methods here

CwxTableListCtrl * m_GroupCtrl

void OnGroupViewClick(wxCommandEvent &event)

vector< CSeq_id_Handle > m_LocHandles

IProjectViewFactory * m_PVFactory

void SetProjectViewFactory(IProjectViewFactory *factory)

vector< set< CSeq_id_Handle > > m_AlnHandles

virtual bool GetSelectedIndices(vector< int > &buf)

CObjectListWidgetSel * m_ListPanel

virtual void EnforceOneViewPerObject()

Force OneViewPerObject true, and lock it.

wxCheckBox * m_OneViewPerObjectCheckBox

virtual void LoadSettings()

wxCheckBox * m_GroupCheckBox

vector< int > m_GroupSize

virtual void SetRegistryPath(const string &path)

virtual bool Create(wxWindow *parent, wxWindowID id=ID_CCONVERSIONRESULTPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxNO_BORDER|wxTAB_TRAVERSAL)

virtual void CreateControls()

virtual bool GetSelection(TConstScopedObjects &buf)

Return the selected item.

CRegistryWriteView GetWriteView(const string &section)

get a read-write view at a particular level.

static CGuiRegistry & GetInstance()

access the application-wide singleton

CRegistryReadView GetReadView(const string &section) const

get a read-only view at a particular level.

vector< TRelation > TRelationVector

static void FindRelations(objects::CScope &scope, const CObject &obj, const string &to_type_in, TRelationVector &relations)

CObjectList Data structure representing a list of CObjects with associated Scopes and other optional ...

int AddRow(CObject *obj, objects::CScope *scope)

void SetString(int col, int row, const string &val)

int AddColumn(EColumnType type, const string &name, int col=-1)

virtual bool CanDo(EAction action)

indicates whether a transition (action) is possible

const CProjectViewTypeDescriptor * m_Descriptor

virtual void SetInputObjects(const TConstScopedObjects &input)

Set input objects that serve as original user input data.

virtual bool AtFinalStep()

true if state is Final (i.e. "Finish" button shall be shown instead of "Next")

virtual void CleanUI()

clean UI objects associated with the Manager

virtual const TConstScopedObjects & GetOutputObjects() const

Return the final input objects for views after possible object conversions and object aggregation.

virtual void SetParentWindow(wxWindow *parent)

vector< int > m_OutputIndices

virtual bool IsCompletedState()

true if data gathering has finished and Open dialog shall be closed

IProjectViewFactory * m_Factory

CParamsPanel * m_ParamPanel

The GUI panel listing the parameters guiding the object conversion and the conversion results.

void SetProjectViewFactory(IProjectViewFactory *factory)

bool mf_IsCombineRequested

void x_DoConversion(TObjectListMap &objects)

virtual bool NeedParamsPanel(const TObjectListMap &objects)

void DoAsyncConversion(TObjectListMap &objects, ICanceled &cancel)

virtual const vector< int > GetOutputIndices() const

virtual CParamsPanel * CreateParamsPanel()

virtual void SaveSettings() const

virtual wxPanel * GetCurrentPanel()

return the panel corresponding to the current state the function may create a new panel or return a p...

virtual bool DoTransition(EAction action)

perform transition if possible and returns true, otherwise the function shall warn the user about the...

wxWindow * m_ParentWindow

virtual void InitUI()

initialize the Manager before using in UI (set it to Initial state)

TConstScopedObjects m_InputObjects

objects that serve as input arguments for the object converter

virtual void FinalizeParams()

TConstScopedObjects m_OutputObjects

The output objects after view-specific object conversion and possible object aggregation.

virtual void LoadSettings()

virtual void SetRegistryPath(const string &path)

void x_LoadParamPanelSettings()

CPVFactoryCombinator(IProjectViewFactory *factory)

virtual void operator()(const TConstScopedObjects &objects, TObjectsMap &objects_map) const

IProjectViewFactory * m_Factory

virtual bool IsCombineRequested() const

virtual bool GetSelectedObjects(TConstScopedObjects &buf)

TObjectListMap m_ObjectMaps

void OnOneViewPerObjectClick(wxCommandEvent &event)

virtual bool GetSelectedIndices(vector< int > &buf)

wxBitmap GetBitmapResource(const wxString &name)

virtual void SetObjects(const TObjectListMap &objs)

add your methods here

virtual void LoadSettings()

virtual void SaveSettings() const

static bool ShowToolTips()

wxIcon GetIconResource(const wxString &name)

virtual void SetRegistryPath(const string &path)

virtual void EnforceOneViewPerObject()

Force OneViewPerObject true, and lock it.

virtual bool Create(wxWindow *parent, wxWindowID id=ID_CPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxNO_BORDER|wxTAB_TRAVERSAL)

const string GetPrimaryInputType() const

EPVObjectsAccepted GetObjectsAccepted() const

class CRegistryReadView provides a nested hierarchical view at a particular key.

bool GetBool(const string &key, bool default_val=false) const

void Set(const string &key, int val)

access a named key at this level, with no recursion

vector< SObject > TObjects

virtual string GetProperty(const string &) const

virtual void GetRelated(objects::CScope &scope, const CObject &obj, TObjects &related, TFlags flags=eDefault, ICanceled *cancel=NULL) const =0

@ fConvert_NoExpensive

do not perform any expensive tests (such as fetching from the network)

TDim CheckNumRows(void) const

Validatiors.

const CSeq_id & GetSeq_id(TDim row) const

Get seq-id (the first one if segments have different ids).

Base class for all serializable objects.

CwxTextTableModel - very simple model for storing SMALL numbers fo strings.

virtual void Init(int n_cols, int n_rows)

virtual void SetStringValueAt(int row, int col, const wxString &value)

CwxTableListCtrl - generic wxListCtrl-based Table Control.

wxArrayInt GetDataRowsSelected() const

void SetModel(IwxTableModel *data_model, bool own=false)

Interface for testing cancellation request in a long lasting operation.

virtual bool IsCompatibleWith(const CObject &object, objects::CScope &scope)

virtual vector< int > CombineInputObjects(const TConstScopedObjects &objects)

virtual const CProjectViewTypeDescriptor & GetProjectViewTypeDescriptor() const =0

returns a Descriptor for the View Type supported by the Factory

virtual void CombineObjects(const TConstScopedObjects &objects, TObjectsMap &objects_map)

container_type::const_iterator const_iterator

const_iterator begin() const

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static const column_t columns[]

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define NCBI_CATCH(message)

Catch CExceptions as well This macro is deprecated - use *_X or *_XX variant instead of it.

const string & GetMsg(void) const

Get message string.

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

EDialogReturnValue NcbiMessageBox(const string &message, TDialogType type=eDialog_Ok, EDialogIcon icon=eIcon_Exclamation, const string &title="Error", EDialogTextMode text_mode=eRaw)

virtual const string & GetLabel() const

vector< SConstScopedObject > TConstScopedObjects

virtual const CTypeInfo * GetThisTypeInfo(void) const =0

string GetSeqIdString(bool with_version=false) const

Return seqid string with optional version for text seqid type.

CConstRef< CSeq_id > GetSeqId(void) const

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

int Compare(const CSeq_loc &loc) const

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

CSeq_id_Handle GetIdHandle(const CSeq_loc &loc, CScope *scope)

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

@ fWithCommas

Use commas as thousands separator.

static const char label[]

unsigned int

A callback function used to compare two keys in a database.

const struct ncbi::grid::netcache::search::fields::SIZE size

#define MAX_NUM_VIEWS_SAFE

static const char * kOneViewPerObject

#define row(bind, expected)

bool operator()(const CSeq_loc *loc1, const CSeq_loc *loc2) const

wxString ToWxString(const string &s)


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