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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/omssaapp_8hpp_source.html below:

NCBI C++ ToolKit: src/algo/ms/omssa/omssaapp.hpp Source File

SetOutFile(

IncludeSpectra,

() = 0;

PrintEnzymes(

);

PrintIons(

);

GetnThreads(

)

;

& SetnThreads(

);

SetThreadCount(

NumThreads);

<

T>

TStringList::iterator iList(List.begin());

(;iList != List.end(); iList++) {

ToInsert.push_back(Num);

<

T>

TStringList::iterator iList(List.begin());

(;iList != List.end(); iList++) {

ToInsert.push_back(*iList);

list< string > TStringList

int nThreads

number of search threads

const TSearchThreads & GetsearchThreads(void) const

get a list of the search engine threads

TSearchThreads & SetsearchThreads(void)

return a settable list of search engine threads

const int GetnThreads(void) const

return number of threads

int & SetnThreads(void)

return settable number of threads

vector< CRef< CSearch > > TSearchThreads

virtual int Run()=0

Run the application.

TSearchThreads searchThreads

search threads

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Info(CExceptionArgs_Base &args)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

#define NCBI_XOMSSA_EXPORT

EMSSerialDataFormat

Access to EMSSerialDataFormat's attributes (values, names) as defined in spec.

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

Defines command line argument related classes.

Defines NCBI C++ diagnostic APIs, classes, and macros.

Defines unified interface to application:

NCBI C++ stream class wrappers for triggering between "new" and "old" C++ stream libraries.

void InsertListString(const string &Input, T &ToInsert, string error)

template for inserting elements of comma delimited string of strings into a list

void InsertList(const string &Input, T &ToInsert, string error)

template for inserting elements of comma delimited string of ints into a list

char const *const kIonLabels[eMSIonType_max]

some friendly names for ion series

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