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NCBI C++ ToolKit: include/objmgr/util/objutil.hpp Source File

& prefix,

noRedundancy=

);

noRedundancy=

);

&

(

&

,

trim_beginning =

,

trim_end =

);

num_segs(0), num_gaps(0), residues(0), num_faked_gaps(0)

*

(

aa,

is_ascii);

<

T>

<<

<<

<<

<<

;

namespace ncbi::objects::

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * str(char *buf, int n)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

#define NCBI_XOBJEDIT_EXPORT

static void text(MDB_val *v)

bool TrimSpacesAndJunkFromEnds(string &str, bool allow_ellipsis=false)

const char * strLinkBaseGeneOntologyRef

string & CompressSpaces(string &str, const bool trim_beginning=true, const bool trim_end=true)

void DateToString(const CDate &date, string &str, EDateToString format_choice=eDateToString_regular)

bool RemovePeriodFromEnd(string &str, bool keep_ellipsis=true)

const char * strLinkBaseGenomePrj

bool IsValidAccession(const string &accn, EAccValFlag flag=eValidateAcc)

const char * strLinkBaseProt

bool StripSpaces(string &str)

const char * strLinkBaseNucSearch

const char * strLinkBaseNuc

const char * strLinkBaseEntrezViewer

const char * strLinkBaseTaxonomy

const char * strLinkBaseGeneOntology

void TryToSanitizeHtmlList(std::list< std::string > &strs)

void ExpandTildes(string &s, ETildeStyle style)

const char * strLinkBaseLatLon

const char * strLinkBaseTransTable

void GetDeltaSeqSummary(const CBioseq_Handle &seq, SDeltaSeqSummary &summary)

bool ConvertQuotesNotInHTMLTags(string &str)

const char * GetAAName(unsigned char aa, bool is_ascii)

const char * strLinkBasePubmed

const char * strLinkBaseUniProt

void JoinString(string &to, const string &prefix, const string &str, bool noRedundancy=true)

bool CommentHasSuspiciousHtml(const string &str)

void AddPeriod(string &str)

void NcbiId(CNcbiOstream &os, const T &id, bool html=false)

const string & GetTechString(int tech)

void CleanAndCompress(string &dest, const CTempString &instr)

EResolveOrder GetResolveOrder(CScope &scope, const CSeq_id_Handle &mrna, const CSeq_id_Handle &prot, CBioseq_Handle &mrna_bsh, CBioseq_Handle &prot_bsh)

void TrimSpaces(string &str, size_t indent=0)

const char * strLinkBaseUSPTO

bool GetModelEvidance(const CBioseq_Handle &bsh, SModelEvidance &me)

void ConvertQuotes(string &str)

void TryToSanitizeHtml(std::string &str)

const char * strLinkBaseExpasy

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

std::pair< Int8, Int8 > TSpanType

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