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NCBI C++ ToolKit: src/serial/objostrxml.cpp Source File

m_LastTagAction(eTagClose), m_SpecRef(eSpecRefNotSet), m_EndTag(

),

m_UseDefaultDTDFilePrefix(

),

m_UsePublicId(

),

m_RealFmt( eRealScientificFormat ),

m_UseXmlDecl(

), m_UseSchemaLoc(

),

m_LastTagAction(eTagClose), m_SpecRef(eSpecRefNotSet), m_EndTag(

),

m_UseDefaultDTDFilePrefix(

),

m_UsePublicId(

),

m_RealFmt( eRealScientificFormat ),

m_UseXmlDecl(

), m_UseSchemaLoc(

),

(

& ~accepted) {

);

& s =

->GetModuleName();

( string::const_iterator

= s.begin();

!= s.end(); ++

) {

( !

((

) c) )

& s =

->GetModuleName();

( string::const_iterator

= s.begin();

!= s.end(); ++

) {

(

->GetName().find(

) != string::npos) {

(ns_name.empty()) {

xs_prefix(

);

(

->HasNamespaceName()) {

prefix(

->GetNamespacePrefix());

(

->HasNamespaceName()) {

& ns_prefix)

nsPrefix(ns_prefix);

& valueName)

skipname = valueName.empty() ||

((

)c < 0x20) {

hi = ch >> 4;

lo = ch & 0xF;

(x < 0x20 && x > 0x0 && x != 0x9 && x != 0xA && x != 0xD);

( string::const_iterator

=

.begin();

!=

.end(); ++

) {

(

[width-1] ==

) {

(

[width-1] ==

) {

width = snprintf(

,

(

)/

(

),

, (

)digits,

);

* dot = strchr(

,

);

obj_name = obj.

();

(obj_name.empty()) {

(obj_name.empty()) {

vector<CSerialAttribInfoItem>& attlist = obj.

();

(!attlist.empty()) {

vector<CSerialAttribInfoItem>::const_iterator it;

( it = attlist.begin(); it != attlist.end(); ++it) {

ns(it->GetNamespaceName());

(!ns_prefix.empty()) {

(!ns_prefix.empty()) {

(

.empty()) {

was_open =

, was_close=

;

is_tag =

;

attr_close =

;

(

* is =

.c_str(); *is; ++is) {

(*is ==

&& *(is+1) ==

) {

(*(is+1) ==

) {

(!was_open && was_close) {

is_tag = was_open =

;

is_tag = was_open =

;

(*is !=

&& *is !=

&& *is != attr_close) {

(*(is+1) ==

) {

(is_tag && *is ==

&& (*(is+1) ==

|| *(is+1) ==

)) {

attr_close = *(is+1);

.ReadAnyContentObject(obj);

ToHex[] =

;

( CBitString::const_iterator

= obj.begin(); !

; ) {

CBitString::statistics

;

*

= (

*)

(

.max_serialize_mem);

(;

< ilast; ++

) {

.ReadBitString(obj);

( ; *

; ++

) {

(

* src =

.c_str(); *src; ++src ) {

( string::const_iterator

=

.begin();

!=

.end(); ++

) {

.ReadStringStore(

);

( string::const_iterator

=

.begin();

!=

.end(); ++

) {

(

().GetNotag() && !notag) {

);

( !name.empty() ) {

(clType && clType->

()) {

( elementType->

().empty() ) {

( !cType->

().empty() ) {

+

+

(

.IsAttlist()) {

needTag =

;

needTag =

;

*

=

;

* bytes,

length)

chunk_in = 57;

chunk_out = 80;

(length > chunk_in) {

dst_buf[chunk_out];

bytes_left = length;

src_read=0, dst_written=0, line_len=0;

(bytes_left > 0 && bytes_left <= length) {

dst_buf, chunk_out, &dst_written, &line_len);

bytes_left -= src_read;

(bytes_left > 0) {

(length > chunk_in) {

( length-- > 0 ) {

*

,

length)

( length-- > 0 ) {

c = *

++;

CObjectOStreamXml::TraceTag(

& name)

cout <<

<< name;

ncbi::TMaskedQueryRegions mask

Serializable object that stores any combination of parsable data.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

CTypeInfo class contains all information about C++ types (both basic and classes): members and layout...

size_type size() const noexcept

Returns bvector's capacity (number of bits it can store)

bvector_size_type size_type

enumerator first() const

Returns enumerator pointing on the first non-zero bit.

enumerator end() const

Returns enumerator pointing on the next bit after the last.

void calc_stat(struct bm::bvector< Alloc >::statistics *st) const noexcept

Calculates bitvector statistics.

const_iterator end() const

const_iterator find(const key_type &key) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

std::ofstream out("events_result.xml")

main entry point for tests

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static const char * str(char *buf, int n)

@ eTakeOwnership

An object can take ownership of another.

@ eNoOwnership

No ownership is assumed.

#define ERR_POST_X_ONCE(err_subcode, message)

Error posting only once during program execution with default error code and given error subcode.

void Warning(CExceptionArgs_Base &args)

#define finite

Define value of finite (Is Finite).

const CMemberId & GetId(void) const

const string & GetName(void) const

void WriteVariant(CObjectOStream &out, TConstObjectPtr choicePtr) const

bool IsNillable(void) const

void WriteMember(CObjectOStream &out, TConstObjectPtr classPtr) const

const CItemInfo * GetItemInfo(TMemberIndex index) const

static TMemberIndex FirstIndex(void)

bool HasNotag(void) const

const string & GetName(void) const

bool HaveNoPrefix(void) const

TTypeInfo GetTypeInfo(void) const

const string & FindNameEx(TEnumValueType value, bool allowBadValue) const

bool IsInteger(void) const

Check whether the type is defined as INTEGER in ASN.1 spec.

const CStringUTF8 & GetValue(void) const

Get normalized value.

size_t TMemberIndex

Type used for indexing class members and choice variants.

const string & GetNamespaceName(void) const

Get namespace name.

const void * TConstObjectPtr

const string & GetNamespacePrefix(void) const

Get namespace prefix.

static const TObjectType * SafeCast(TTypeInfo type)

unsigned int TSerial_Format_Flags

MSerial_Format –.

const string & GetName(void) const

Get local name.

const vector< CSerialAttribInfoItem > & GetAttributes(void) const

Get object attributes.

@ eSerialVerifyData_Yes

do verify

@ fSerial_Xml_NoEol

do not write end-of-line symbol

@ fSerial_Xml_NoIndentation

do not use indentation

@ fSerial_Xml_NoSchemaLoc

do not write schemaLocation data

@ fSerial_Xml_NoXmlDecl

do not write XMLDecl

@ fSerial_Xml_RefSchema

use reference to a Schema

@ fSerial_Xml_NoRefDTD

do not use reference to a DTD

@ eStringTypeUTF8

UTF8-encoded string.

virtual void WriteString(const string &s, EStringType type=eStringTypeVisible) override

static ETypeFamily GetRealTypeFamily(TTypeInfo typeInfo)

virtual void WriteEnum(const CEnumeratedTypeValues &values, TEnumValueType value) override

virtual void CopyStringStore(CObjectIStream &in) override

void SetDefaultStringEncoding(EEncoding enc)

Set default encoding of 'string' objects If XML data encoding is different, string will be converted ...

void WriteTag(const string &name)

virtual void WriteOther(TConstObjectPtr object, TTypeInfo typeInfo) override

char ReplaceVisibleChar(char c, EFixNonPrint fix_method, const CObjectStack *io, const CTempString &str, char subst)

static string sm_DefaultDTDFilePrefix

virtual void WriteBytes(const ByteBlock &block, const char *bytes, size_t length) override

bool GetReferenceDTD(void) const

Get DTD referencing parameter.

MLIOVIR void WriteClassMemberSpecialCase(const CMemberId &memberId, TTypeInfo memberType, TConstObjectPtr memberPtr, ESpecialCaseWrite how)

void x_WriteClassNamespace(TTypeInfo type)

void WriteClassMember(const CConstObjectInfoMI &member)

ERealValueFormat m_RealFmt

EFixNonPrint x_FixCharsMethod(void) const

void WriteEscapedChar(char c)

bool x_SpecialCaseWrite(void)

virtual void EndContainer(void) override

virtual void EndNamedType(void) override

virtual void BeginClassMember(const CMemberId &id) override

#define END_OBJECT_2FRAMES_OF(Stream)

virtual void BeginChoice(const CChoiceTypeInfo *choiceType) override

bool GetEnforcedStdXml(void)

Get scope prefixes handling parameter.

virtual void SetFormattingFlags(TSerial_Format_Flags flags) override

Set output formatting flags.

virtual void EndClassMember(void) override

static TTypeInfo GetRealTypeInfo(TTypeInfo typeInfo)

void SetUseSchemaLocation(bool use_loc=true)

Put Schema location information into generated XML document.

virtual void WriteAnyContentObject(const CAnyContentObject &obj) override

void CopyObject(TTypeInfo objectType, CObjectStreamCopier &copier)

void SetReferenceSchema(bool use_schema=true)

Make generated XML document reference XML schema.

void OpenStackTag(size_t level)

virtual void WriteDouble(double data) override

#define ThrowError(flag, mess)

bool GetUseSchemaLocation(void) const

Get Schema location output parameter.

map< string, string > m_NsNameToPrefix

void CloseTag(const string &name)

void PrintTagName(size_t level)

virtual void WriteBool(bool data) override

bool IsCompressed(void) const

void SetReferenceDTD(bool use_dtd=true)

Make generated XML document reference DTD.

EEncoding m_StringEncoding

#define BEGIN_OBJECT_FRAME2(Type, Arg)

map< string, string > m_NsPrefixToName

void WriteContainerContents(const CContainerTypeInfo *containerType, TConstObjectPtr containerPtr)

virtual void WriteOtherEnd(TTypeInfo typeInfo) override

virtual void WriteNull(void) override

MLIOVIR void WriteContainer(const CContainerTypeInfo *containerType, TConstObjectPtr containerPtr)

virtual void BeginNamedType(TTypeInfo namedTypeInfo)

void SetNotag(bool set=true)

virtual void WriteBitString(const CBitString &obj) override

virtual void EndChoice(void) override

void WriteDouble2(double data, unsigned digits)

TFrame & FetchFrameFromTop(size_t index)

virtual void EndOfWrite(void) override

virtual void WriteSeparator(void) override

virtual void EndNamedType(void)

void WriteObject(const CConstObjectInfo &object)

deque< string > m_NsPrefixes

string GetDefaultSchemaNamespace(void)

Get default value of namespace name of generated DTD documents.

void CloseTagIfNamed(TTypeInfo type)

virtual void BeginContainerElement(TTypeInfo elementType) override

void Write(const CConstObjectInfo &object)

virtual void CopyString(CObjectIStream &in, EStringType type=eStringTypeVisible) override

ERealValueFormat

formatting of values of type 'real' ('double')

void EndArrayElement(void)

void WriteEncodedChar(const char *&src, EStringType type=eStringTypeVisible)

static TTypeInfo GetContainerElementTypeInfo(TTypeInfo typeInfo)

bool GetReferenceSchema(void) const

Get Schema referencing parameter.

#define END_OBJECT_FRAME()

size_t GetStackDepth(void) const

CObjectIStream & In(void) const

virtual ~CObjectOStreamXml(void)

Destructor.

virtual void CopyAnyContentObject(CObjectIStream &in) override

virtual void BeginClass(const CClassTypeInfo *classInfo) override

virtual void EndChoiceVariant(void) override

bool WillHaveName(TTypeInfo elementType)

string GetModuleName(TTypeInfo type)

void OpenTagIfNamed(TTypeInfo type)

ESpecialCaseWrite m_SpecialCaseWrite

const TFrame & TopFrame(void) const

TTypeInfo GetTypeInfo(void) const

virtual void WriteInt8(Int8 data) override

ERealValueFormat GetRealValueFormat(void) const

Get formatting of values of type real.

char x_FixCharsSubst(void) const

MLIOVIR void CopyNamedType(TTypeInfo namedTypeInfo, TTypeInfo typeInfo, CObjectStreamCopier &copier)

virtual void EndOfWrite(void)

MLIOVIR void WriteClass(const CClassTypeInfo *objectType, TConstObjectPtr objectPtr)

void WriteBase64Bytes(const char *bytes, size_t length)

void BeginArrayElement(TTypeInfo elementType)

virtual void CopyBitString(CObjectIStream &in) override

bool StackIsEmpty(void) const

const CMemberId & GetMemberId(void) const

void WriteChoiceContents(const CChoiceTypeInfo *choiceType, TConstObjectPtr choicePtr)

virtual void WriteChar(char data) override

virtual void CopyEnum(const CEnumeratedTypeValues &values, CObjectIStream &in) override

virtual void WriteFileHeader(TTypeInfo type) override

#define BEGIN_OBJECT_2FRAMES_OF2(Stream, Type, Arg)

void CloseStackTag(size_t level)

virtual void WriteNullPointer(void) override

bool HasMemberId(void) const

virtual void WriteFloat(float data) override

virtual void EndClass(void) override

void x_EndNamespace(const string &ns_name)

EEncoding GetEncoding(void) const

Get XML character encoding.

EEncoding GetDefaultStringEncoding(void) const

Get default encoding of 'string' objects.

virtual void WriteUint8(Uint8 data) override

virtual void WriteChars(const CharBlock &block, const char *chars, size_t length) override

virtual void WriteUint4(Uint4 data) override

void x_EndTypeNamespace(void)

virtual void WriteObjectReference(TObjectIndex index) override

string GetDTDFilePrefix(void) const

Get DTD or schema file prefix.

bool x_ProcessTypeNamespace(TTypeInfo type)

void OpenTag(const string &name)

EFrameType GetFrameType(void) const

string GetSeparator(void) const

Get separator.

virtual void WriteCString(const char *str) override

virtual void WriteInt4(Int4 data) override

bool x_BeginNamespace(const string &ns_name, const string &ns_prefix)

void SetEncoding(EEncoding enc)

Set XML character encoding.

MLIOVIR void WriteNamedType(TTypeInfo namedTypeInfo, TTypeInfo typeInfo, TConstObjectPtr object)

bool m_WriteNamedIntegersByValue

virtual void WriteOtherBegin(TTypeInfo typeInfo) override

virtual void EndContainerElement(void) override

void SetEnforcedStdXml(bool set=true)

Set up scope prefixes handling.

void SetRealValueFormat(ERealValueFormat fmt)

Set formatting of values of type real The method is provided for convenience only.

virtual void BeginNamedType(TTypeInfo namedTypeInfo) override

ETagAction m_LastTagAction

void SelfCloseTagEnd(void)

virtual void WriteStringStore(const string &s) override

static CObjectOStream * OpenObjectOStreamXml(CNcbiOstream &out, EOwnership deleteOut)

virtual void SetFormattingFlags(TSerial_Format_Flags flags)

Set output formatting flags.

void CheckStdXml(TTypeInfo classType)

virtual void BeginContainer(const CContainerTypeInfo *containerType) override

void OpenTagEndBack(void)

CObjectOStreamXml(CNcbiOstream &out, bool deleteOut)

Constructor.

ESerialVerifyData GetVerifyData(void) const

Get output data verification parameter.

void SetSpecialCaseWrite(ESpecialCaseWrite how)

virtual string GetPosition(void) const override

Get current stream position as string.

virtual void BeginChoiceVariant(const CChoiceTypeInfo *choiceType, const CMemberId &id) override

@ fIllegalCall

Illegal in a given context function call.

@ fInvalidData

Output data is incorrect.

@ fUnassigned

Mandatory object member is unassigned Normally this results in throwing CUnassignedMember exception.

@ eRealFixedFormat

use 'f' formatting type

uint8_t Uint1

1-byte (8-bit) unsigned integer

int32_t Int4

4-byte (32-bit) signed integer

uint32_t Uint4

4-byte (32-bit) unsigned integer

int64_t Int8

8-byte (64-bit) signed integer

uint64_t Uint8

8-byte (64-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void IncIndentLevel(size_t step=2)

void SetBackLimit(size_t limit)

size_t GetLine(void) const

void PutString(const char *str, size_t length)

void PutEol(bool indent=true)

void DecIndentLevel(size_t step=2)

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

NCBI_NS_STD::string::size_type SIZE_TYPE

static string SizetToString(size_t value, TNumToStringFlags flags=0, int base=10)

Convert size_t to string.

static string DoubleToString(double value, int precision=-1, TNumToStringFlags flags=0)

Convert double to string.

static SIZE_TYPE DoubleToStringPosix(double value, unsigned int precision, char *buf, SIZE_TYPE buf_size)

Convert double to string with specified precision and put the result into a character buffer,...

static string EncodingToString(EEncoding encoding)

Give Encoding name as string.

char32_t TUnicodeSymbol

Unicode character.

static char SymbolToChar(TUnicodeSymbol sym, EEncoding encoding)

Convert Unicode code point into encoded character.

static CStringUTF8 AsUTF8(const CTempString &src, EEncoding encoding, EValidate validate=eNoValidate)

Convert into UTF8 from a C/C++ string.

static TUnicodeSymbol CharToSymbol(char ch, EEncoding encoding)

Convert encoded character into Unicode.

static TUnicodeSymbol Decode(const char *&src)

Convert sequence of UTF8 code units into Unicode code point.

@ fDoublePosix

DoubleToString*(): Use C locale for double conversions.

const string & GetName(void) const

Get name of this type.

bool HasNamespaceName(void) const

Check if data type has namespace name.

const CItemsInfo & GetItems(void) const

EDataSpec GetDataSpec(void) const

ETypeFamily GetTypeFamily(void) const

const string & GetNamespaceName(void) const

Get namespace name.

TMemberIndex GetIndex(TConstObjectPtr object) const

const CMemberInfo * GetMemberInfo(TMemberIndex index) const

const CVariantInfo * GetVariantInfo(TMemberIndex index) const

const CItemInfo * GetItemInfo(const string &name) const

bool Implicit(void) const

size_t GetCodeVersion(void) const

ENsQualifiedMode IsNsQualified(void) const

Get namespace 'qualified' property.

TConstObjectPtr GetElementPtr(const CConstIterator &it) const

bool InitIterator(CConstIterator &it, TConstObjectPtr containerPtr) const

bool NextElement(CConstIterator &it) const

TConstObjectPtr GetObjectPointer(TConstObjectPtr object) const

bool IsFullAlias(void) const

TTypeInfo GetElementType(void) const

bool IsImplicitNonEmpty(void) const

enum ENcbiOwnership EOwnership

Ownership relations between objects.

size_t serialize(const BV &bv, unsigned char *buf, bm::word_t *temp_block=0, unsigned serialization_flags=0)

Saves bitvector into memory.

unsigned int

A callback function used to compare two keys in a database.

Definition of all error codes used in serial libraries (xser.lib, xcser.lib).

void aligned_free(void *ptr) BMNOEXCEPT

Aligned free.

void * aligned_new_malloc(size_t size)

Aligned malloc (unlike classic malloc it throws bad_alloc exception)

const unsigned set_block_alloc_size

const GenericPointer< typename T::ValueType > T2 value

static const BitmapCharRec *const chars[]

std::istream & in(std::istream &in_, double &x_)

const char * sm_DefaultSchemaNamespace

static string GetPublicModuleName(TTypeInfo type)

const char * sm_DefaultNamespacePrefix

static const char * s_SchemaInstanceNamespace

static const char *const HEX

static SLJIT_INLINE sljit_ins st(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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