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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/objostrasn_8cpp_source.html below:

NCBI C++ ToolKit: src/serial/objostrasn.cpp Source File

54 #define NCBI_USE_ERRCODE_X Serial_OStream 200 if

(memcmp(&

data

, &zero,

sizeof

(

double

)) == 0) {

227 #if !defined(NCBI_COMPILER_MSVC) 228 int

width = snprintf(

buffer

sizeof

(

buffer

sizeof

(

char

"%.*e"

int

(digits-1),

data

);

229 if

( width <= 0 || width >=

int

(

sizeof

(

buffer

) - 1) )

232 char

* dotPos = strchr(

buffer

'.'

);

234

dotPos = strchr(

buffer

','

);

237 char

* ePos = strchr(dotPos,

'e'

);

246 if

( sscanf(ePos + 1,

"%d"

, &exp) != 1 )

250 int

fractDigits =

int

(ePos - dotPos - 1);

251 while

( fractDigits > 0 && ePos[-1] ==

'0'

) {

266 int

width = snprintf(

buffer

sizeof

(

buffer

sizeof

(

char

"%.*g"

int

(digits),

data

);

267 if

( width <= 0 || width >=

int

(

sizeof

(

buffer

) - 1) )

272 const char

* ePos = strchr(

buffer

'e'

);

274 if

( sscanf(ePos + 1,

"%d"

, &exp) != 1 )

279 char

* dotPos = strchr(

buffer

'.'

);

281

dotPos = strchr(

buffer

','

);

284

exp -= (

int

)(ePos - dotPos - 1);

285 memmove

(dotPos, dotPos+1, strlen(dotPos+1));

288 while

( ePos[-1] ==

'0'

) {

292 const char

*start =

buffer

;

293 while

( *start ==

'0'

) {

324 "CObjectOStreamAsn::WriteAnyContentObject: " 325 "unable to write AnyContent object in ASN"

);

336 "CObjectOStreamAsn::CopyAnyContentObject: " 337 "unable to copy AnyContent object in ASN"

);

342 static const char

ToHex[] =

"0123456789ABCDEF"

;

343 bool hex

= obj.

size

()%8 == 0;

345 #if BITSTRING_AS_VECTOR 349 for

( CBitString::const_iterator

= obj.begin();

!= obj.

end

(); ) {

367

CBitString::statistics

;

369 char

buf

= (

char

malloc

(

.max_serialize_mem);

392 for

(;

< ilast; ++

) {

409 in

.ReadBitString(obj);

418 while

( length > 0 ) {

423 #if SERIAL_ALLOW_UTF8_IN_VISIBLESTRING_ON_WRITING 485 in

.ReadStringStore(s);

497 if

(checkCase && !

str

.empty()) {

520 "must be either sizeof(Int4) or sizeof(Int8)"

);

578 #ifdef VIRTUAL_MID_LEVEL_IO 598 "NULL element while writing container "

648 auto

tn = [

this

]()->

const string

& {

653 const string

& name = (

m_TypeAlias

id

.HasNotag()) ? tn() :

id

.GetName();

655 if

( !name.empty() ) {

656 if

(

id

.HaveNoPrefix() &&

isupper

((

unsigned char

)name[0])) {

664 else if

(

id

.HaveExplicitTag() ) {

686 #ifdef VIRTUAL_MID_LEVEL_IO 814

pos.SetIndex(index + 1);

823 for

( ; pos.Valid(); ++pos ) {

873 static const char HEX

[] =

"0123456789ABCDEF"

;

876 const char

* bytes,

size_t

length)

883 while

( length-- > 0 ) {

903 const char

chars

size_t

length)

907 while

( length > 0 ) {

911 #if SERIAL_ALLOW_UTF8_IN_VISIBLESTRING_ON_WRITING

ncbi::TMaskedQueryRegions mask

Serializable object that stores any combination of parsable data.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

CTypeInfo class contains all information about C++ types (both basic and classes): members and layout...

size_type size() const noexcept

Returns bvector's capacity (number of bits it can store)

bvector_size_type size_type

enumerator first() const

Returns enumerator pointing on the first non-zero bit.

enumerator end() const

Returns enumerator pointing on the next bit after the last.

void calc_stat(struct bm::bvector< Alloc >::statistics *st) const noexcept

Calculates bitvector statistics.

Include a standard set of the NCBI C++ Toolkit most basic headers.

std::ofstream out("events_result.xml")

main entry point for tests

static const char * str(char *buf, int n)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

@ eTakeOwnership

An object can take ownership of another.

@ eNoOwnership

No ownership is assumed.

#define finite

Define value of finite (Is Finite).

const CMemberId & GetId(void) const

bool IsAttlist(void) const

void WriteMember(CObjectOStream &out, TConstObjectPtr classPtr) const

void CopyMissingMember(CObjectStreamCopier &copier) const

void CopyMember(CObjectStreamCopier &copier) const

TMemberIndex LastIndex(void) const

const string & FindNameEx(TEnumValueType value, bool allowBadValue) const

bool IsInteger(void) const

Check whether the type is defined as INTEGER in ASN.1 spec.

EFixNonPrint

How to process non-printing character in the ASN VisibleString.

const CStringUTF8 & GetValue(void) const

Get normalized value.

size_t TMemberIndex

Type used for indexing class members and choice variants.

const TMemberIndex kFirstMemberIndex

Start if member indexing.

const TMemberIndex kInvalidMember

Special value returned from FindMember.

const void * TConstObjectPtr

const string & GetName(void) const

Get local name.

@ eFNP_Allow

pass through unchanged, post no error message

@ eSerialVerifyData_Yes

do verify

@ eStringTypeUTF8

UTF8-encoded string.

@ eSerial_AsnText

ASN.1 text.

virtual void BeginBytes(const ByteBlock &block) override

virtual void CopyString(CObjectIStream &in, EStringType type=eStringTypeVisible) override

virtual void WriteInt8(Int8 data) override

char ReplaceVisibleChar(char c, EFixNonPrint fix_method, const CObjectStack *io, const CTempString &str, char subst)

virtual void EndClassMember(void)

virtual void WriteCString(const char *str) override

void WriteClassMember(const CConstObjectInfoMI &member)

EFixNonPrint x_FixCharsMethod(void) const

void SetAutoSeparator(bool value)

Set separator auto-output paramater.

virtual void EndChars(const CharBlock &block) override

CObjectOStreamAsn(CNcbiOstream &out, EFixNonPrint how=eFNP_Default)

Constructor.

#define END_OBJECT_2FRAMES_OF(Stream)

virtual void EndContainerElement(void)

virtual void WriteInt4(Int4 data) override

bool GoodVisibleChar(char c)

virtual void EndClass(void) override

virtual void WriteChars(const CharBlock &block, const char *chars, size_t length) override

virtual void CopyStringStore(CObjectIStream &in) override

void CopyObject(TTypeInfo objectType, CObjectStreamCopier &copier)

virtual void WriteUint4(Uint4 data) override

static CObjectOStream * OpenObjectOStreamAsn(CNcbiOstream &out, EOwnership deleteOut)

virtual void WriteOther(TConstObjectPtr object, TTypeInfo typeInfo) override

#define ThrowError(flag, mess)

virtual void EndContainer(void)=0

virtual void BeginClassMember(const CMemberId &id) override

virtual void WriteBytes(const ByteBlock &block, const char *bytes, size_t length) override

virtual void WriteOtherBegin(TTypeInfo typeInfo) override

virtual void WriteObjectReference(TObjectIndex index) override

virtual void EndContainer(void) override

void DuplicatedMember(const CMemberInfo *memberInfo)

virtual TMemberIndex BeginClassMember(const CClassTypeInfo *classType)=0

bool IsCompressed(void) const

#define BEGIN_OBJECT_FRAME2(Type, Arg)

virtual void WriteFloat(float data) override

virtual void EndBytes(const ByteBlock &block) override

MLIOVIR void WriteContainer(const CContainerTypeInfo *containerType, TConstObjectPtr containerPtr)

void SetNotag(bool set=true)

void SetPathHooks(CObjectStack &stk, bool set)

virtual void WriteBool(bool data) override

virtual void CopyBitString(CObjectIStream &in) override

void WriteObject(const CConstObjectInfo &object)

virtual void WriteString(const string &str, EStringType type=eStringTypeVisible) override

#define BEGIN_OBJECT_2FRAMES_OF(Stream, Type)

void Write(const CConstObjectInfo &object)

virtual void BeginContainer(const CContainerTypeInfo *containerType)=0

virtual void WriteSeparator(void) override

virtual void BeginChoiceVariant(const CChoiceTypeInfo *choiceType, const CMemberId &id) override

virtual ~CObjectOStreamAsn(void)

Destructor.

virtual void WriteBitString(const CBitString &obj) override

#define END_OBJECT_FRAME()

#define BEGIN_OBJECT_FRAME_OF2(Stream, Type, Arg)

virtual void WriteNullPointer(void) override

virtual void WriteUint8(Uint8 data) override

CObjectIStream & In(void) const

virtual void BeginContainer(const CContainerTypeInfo *containerType) override

virtual void WriteChar(char data) override

virtual void WriteDouble(double data) override

const TFrame & TopFrame(void) const

char x_FixCharsSubst(void) const

MLIOVIR void WriteClass(const CClassTypeInfo *objectType, TConstObjectPtr objectPtr)

void WriteId(const string &str, bool checkCase=false)

void SetTopMemberId(const CMemberId &memberId)

void WriteMemberId(const CMemberId &id)

virtual void CopyEnum(const CEnumeratedTypeValues &values, CObjectIStream &in) override

MLIOVIR void CopyClassRandom(const CClassTypeInfo *objectType, CObjectStreamCopier &copier)

#define BEGIN_OBJECT_2FRAMES_OF2(Stream, Type, Arg)

virtual void EndChoice(void) override

virtual bool BeginContainerElement(TTypeInfo elementType)=0

virtual void BeginChars(const CharBlock &block) override

virtual void CopyAnyContentObject(CObjectIStream &in) override

void SetSeparator(const string sep)

Set separator.

virtual void WriteStringStore(const string &str) override

virtual void BeginClass(const CClassTypeInfo *classInfo) override

string GetSeparator(void) const

Get separator.

EFixNonPrint FixNonPrint(EFixNonPrint how)

bool m_WriteNamedIntegersByValue

MLIOVIR void CopyContainer(const CContainerTypeInfo *containerType, CObjectStreamCopier &copier)

virtual void BeginChoice(const CChoiceTypeInfo *choiceType) override

virtual void EndClass(void)

virtual void BeginClass(const CClassTypeInfo *classInfo)=0

void WriteDouble2(double data, unsigned digits)

virtual void BeginContainerElement(TTypeInfo elementType) override

#define END_OBJECT_FRAME_OF(Stream)

virtual string GetPosition(void) const override

Get current stream position as string.

ESerialVerifyData GetVerifyData(void) const

Get output data verification parameter.

virtual void WriteEnum(const CEnumeratedTypeValues &values, TEnumValueType value) override

virtual void WriteAnyContentObject(const CAnyContentObject &obj) override

virtual void WriteNull(void) override

virtual void WriteFileHeader(TTypeInfo type) override

MLIOVIR void CopyClassSequential(const CClassTypeInfo *objectType, CObjectStreamCopier &copier)

@ fIllegalCall

Illegal in a given context function call.

@ fInvalidData

Output data is incorrect.

@ fNotImplemented

Method is not implemented.

@ fUnassigned

Mandatory object member is unassigned Normally this results in throwing CUnassignedMember exception.

@ fOverflow

Internal buffer overflow.

uint8_t Uint1

1-byte (8-bit) unsigned integer

int32_t Int4

4-byte (32-bit) signed integer

uint32_t Uint4

4-byte (32-bit) unsigned integer

int64_t Int8

8-byte (64-bit) signed integer

uint64_t Uint8

8-byte (64-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void IncIndentLevel(size_t step=2)

void SetBackLimit(size_t limit)

size_t GetLine(void) const

void PutString(const char *str, size_t length)

void PutEol(bool indent=true)

void WrapAt(size_t lineLength, bool keepWord)

void DecIndentLevel(size_t step=2)

bool ZeroIndentLevel(void) const

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

static string SizetToString(size_t value, TNumToStringFlags flags=0, int base=10)

Convert size_t to string.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static SIZE_TYPE EvaluateSymbolLength(const CTempString &src)

Check buffer for presence of UTF-8 byte sequence and return length of first symbol.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static SIZE_TYPE DoubleToString_Ecvt(double value, unsigned int precision, char *buf, SIZE_TYPE buf_size, int *dec, int *sign)

Convert double to string with specified precision.

const string & GetName(void) const

Get name of this type.

const CMemberInfo * GetMemberInfo(TMemberIndex index) const

const CVariantInfo * GetVariantInfo(TMemberIndex index) const

TConstObjectPtr GetElementPtr(const CConstIterator &it) const

bool InitIterator(CConstIterator &it, TConstObjectPtr containerPtr) const

bool NextElement(CConstIterator &it) const

TConstObjectPtr GetObjectPointer(TConstObjectPtr object) const

const CItemsInfo & GetMembers(void) const

TTypeInfo GetElementType(void) const

enum ENcbiOwnership EOwnership

Ownership relations between objects.

size_t serialize(const BV &bv, unsigned char *buf, bm::word_t *temp_block=0, unsigned serialization_flags=0)

Saves bitvector into memory.

unsigned int

A callback function used to compare two keys in a database.

Definition of all error codes used in serial libraries (xser.lib, xcser.lib).

static void hex(unsigned char c)

void aligned_free(void *ptr) BMNOEXCEPT

Aligned free.

void * aligned_new_malloc(size_t size)

Aligned malloc (unlike classic malloc it throws bad_alloc exception)

const unsigned set_block_alloc_size

const GenericPointer< typename T::ValueType > T2 value

static const BitmapCharRec *const chars[]

std::istream & in(std::istream &in_, double &x_)

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static SLJIT_INLINE sljit_ins st(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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