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NCBI C++ ToolKit: include/algo/blast/api/objmgr_query_data.hpp Source File

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vector< CRef<objects::CScope> > ExtractScopes();

#define NCBI_XBLAST_EXPORT

NULL operations for other cases.

Encapsulates ALL the BLAST algorithm's options.

NCBI C++ Object Manager dependant implementation of IQueryFactory.

Source of query sequence data for BLAST Provides an interface for search classes to retrieve sequence...

CRef< CBlastQueryVector > m_QueryVector

TSeqLocVector m_SSeqLocVector

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on th...

vector< TMaskedQueryRegions > TSeqLocInfoVector

Collection of masked regions for all queries in a BLAST search.

Definition of SSeqLoc structure.

vector< SSeqLoc > TSeqLocVector

Vector of sequence locations.

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