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NCBI C++ ToolKit: src/serial/objistrasn.cpp Source File

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ncbi::TMaskedQueryRegions mask

Serializable object that stores any combination of parsable data.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

CTypeInfo class contains all information about C++ types (both basic and classes): members and layout...

void resize(size_type new_size)

Change size of the bvector.

size_type size() const noexcept

Returns bvector's capacity (number of bits it can store)

bool set_bit(size_type n, bool val=true)

Sets bit n.

bvector_size_type size_type

void clear(const size_type *ids, size_type ids_size, bm::sort_order so=bm::BM_UNKNOWN)

clear list of bits in this bitset

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * expect

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

@ eTakeOwnership

An object can take ownership of another.

@ eNoOwnership

No ownership is assumed.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

#define finite

Define value of finite (Is Finite).

const string & FindName(TEnumValueType value, bool allowBadValue) const

Find name of the enum by its numeric value.

const CMemberId & GetId(void) const

bool IsAttlist(void) const

TMemberIndex Find(const CTempString &name) const

CAsnBinaryDefs::TLongTag TTag

const CItemInfo * GetItemInfo(TMemberIndex index) const

bool HasNotag(void) const

TEnumValueType FindValue(const CTempString &name) const

Find numeric value by the name of the enum.

bool IsInteger(void) const

Check whether the type is defined as INTEGER in ASN.1 spec.

string ToString(void) const

EFixNonPrint

How to process non-printing character in the ASN VisibleString.

size_t TMemberIndex

Type used for indexing class members and choice variants.

const TMemberIndex kFirstMemberIndex

Start if member indexing.

const TMemberIndex kInvalidMember

Special value returned from FindMember.

void SetName(const string &name)

Set local name.

void SetValue(const CStringUTF8 &value)

Set normalized value.

@ eFNP_Allow

pass through unchanged, post no error message

@ eStringTypeUTF8

UTF8-encoded string.

@ eStringTypeVisible

VisibleString (in ASN.1 sense)

@ eSerial_AsnText

ASN.1 text.

void AppendStringData(string &s, size_t count, EFixNonPrint fix_method, size_t line)

virtual void SkipChar(void) override

void SkipEndOfLine(char c)

char ReplaceVisibleChar(char c, EFixNonPrint fix_method, const CObjectStack *io, const CTempString &str, char subst)

virtual void SkipSNumber(void) override

virtual void StartDelayBuffer(void) override

CTempString ScanEndOfId(bool isId)

virtual void ReadBitString(CBitString &obj) override

CObjectIStreamAsn(EFixNonPrint how=eFNP_Default)

Constructor.

MLIOVIR void ReadClassSequential(const CClassTypeInfo *classType, TObjectPtr classPtr)

virtual bool BeginContainerElement(TTypeInfo elementType) override

virtual Int8 ReadInt8(void) override

virtual bool EndOfData(void) override

Check if there is still some meaningful data that can be read; this function will skip white spaces a...

virtual size_t ReadBytes(ByteBlock &block, char *dst, size_t length) override

bool GoodVisibleChar(char c)

void ReadStringValue(string &s, EFixNonPrint fix_method)

virtual void BeginClass(const CClassTypeInfo *classInfo) override

virtual void SkipNull(void) override

#define BEGIN_OBJECT_FRAME(Type)

char SkipWhiteSpaceAndGetChar(void)

#define ThrowError(flag, mess)

virtual bool ReadBool(void) override

virtual Uint8 ReadUint8(void) override

virtual void SkipUNumber(void) override

static bool IdChar(char c)

virtual void EndContainer(void) override

void BadStringChar(size_t startLine, char c)

void Expect(char c, bool skipWhiteSpace=false)

virtual EPointerType ReadPointerType(void) override

EFixNonPrint FixNonPrint(EFixNonPrint how)

virtual bool EndOfData(void)

Check if there is still some meaningful data that can be read; in text streams this function will ski...

CTempString ReadLCaseId(char firstChar)

bool IsCompressed(void) const

void UnexpectedMember(const CTempString &id, const CItemsInfo &items)

virtual Int4 ReadInt4(void) override

#define BEGIN_OBJECT_FRAME2(Type, Arg)

virtual void SkipFNumber(void) override

static CObjectIStream * CreateObjectIStreamAsn(void)

MLIOVIR void ReadContainer(const CContainerTypeInfo *containerType, TObjectPtr containerPtr)

virtual void Location(string &, size_t &) const override

Get current stream location as tuple (positiontype:string, size_t).

void SkipObject(const CObjectTypeInfo &objectType)

Skip child object.

virtual char ReadChar(void) override

virtual void SkipAnyContentObject(void) override

virtual void SkipString(EStringType type=eStringTypeVisible) override

virtual void ReadAnyContentObject(CAnyContentObject &obj) override

virtual double ReadDouble(void) override

void SetNotag(bool set=true)

virtual TObjectIndex ReadObjectPointer(void) override

bool CanSkipUnknownMembers(void)

Simple check if it's allowed to skip unknown members.

static bool FirstIdChar(char c)

virtual void SkipBitString(void) override

virtual void BeginChars(CharBlock &block) override

virtual void SkipByteBlock(void) override

virtual size_t ReadChars(CharBlock &block, char *dst, size_t length) override

virtual void ReadNull(void) override

virtual void SkipBool(void) override

#define END_OBJECT_FRAME()

size_t GetStackDepth(void) const

static CObjectIStream * Open(ESerialDataFormat format, CNcbiIstream &inStream, bool deleteInStream)

Create serial object reader and attach it to an input stream.

char SkipWhiteSpace(void)

const TFrame & TopFrame(void) const

CTempString ReadMemberId(char firstChar)

EFixNonPrint x_FixCharsMethod(void) const

virtual void ReadString(string &s, EStringType type=eStringTypeVisible) override

TFailFlags SetFailFlags(TFailFlags flags, const char *message=0)

Set fail flags.

TMemberIndex GetAltItemIndex(const CClassTypeInfoBase *classType, const CTempString &id, const TMemberIndex pos=kInvalidMember)

void UnendedString(size_t startLine)

CTempString ReadUCaseId(char firstChar)

void AppendLongStringData(string &s, size_t count, EFixNonPrint fix_method, size_t line)

virtual void BeginChoice(const CChoiceTypeInfo *choiceType) override

CTempString ReadTypeId(char firstChar)

virtual TMemberIndex BeginClassMember(const CClassTypeInfo *classType) override

TMemberIndex GetMemberIndex(const CClassTypeInfo *classType, const CTempString &id)

MLIOVIR void SkipContainer(const CContainerTypeInfo *containerType)

MLIOVIR void SkipClassSequential(const CClassTypeInfo *classType)

virtual TMemberIndex BeginChoiceVariant(const CChoiceTypeInfo *choiceType) override

virtual void EndClass(void) override

virtual void BeginContainer(const CContainerTypeInfo *containerType) override

bool CanSkipUnknownVariants(void)

Simple check if it's allowed to skip unknown variants.

#define BEGIN_OBJECT_FRAME3(Type, Arg1, Arg2)

virtual void EndChoice(void) override

virtual void StartDelayBuffer(void)

virtual void EndBytes(const ByteBlock &block) override

void ReadAnyContent(string &value)

char x_FixCharsSubst(void) const

virtual Uint4 ReadUint4(void) override

virtual void BeginBytes(ByteBlock &block) override

virtual string ReadFileHeader(void) override

Read file header.

void OpenFromBuffer(const char *buffer, size_t size)

Attach reader to a data source.

MLIOVIR void SkipClassRandom(const CClassTypeInfo *classType)

virtual TEnumValueType ReadEnum(const CEnumeratedTypeValues &values) override

TMemberIndex GetChoiceIndex(const CChoiceTypeInfo *choiceType, const CTempString &id)

virtual string ReadOtherPointer(void) override

void ReadCompressedBitString(CBitString &data)

CTempString ReadNumber(void)

MLIOVIR void ReadClassRandom(const CClassTypeInfo *classType, TObjectPtr classPtr)

void SkipAnyContent(void)

@ fEOF

End of file in the middle of reading an object.

@ fOverflow

Data read is beyond the allowed limits.

@ fIllegalCall

Illegal in a given context function call.

@ fUnknownValue

Unknown value was present in the input.

@ fFormatError

Input file formatting does not conform with specification.

uint8_t Uint1

1-byte (8-bit) unsigned integer

int32_t Int4

4-byte (32-bit) signed integer

uint32_t Uint4

4-byte (32-bit) unsigned integer

int64_t Int8

8-byte (64-bit) signed integer

uint64_t Uint8

8-byte (64-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

char PeekChar(size_t offset=0)

void SkipEndOfLine(char lastChar)

size_t GetLine(void) const

void SkipChars(size_t count)

const char * GetCurrentPos(void) const

char PeekCharNoEOF(size_t offset=0)

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

static string SizetToString(size_t value, TNumToStringFlags flags=0, int base=10)

Convert size_t to string.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static int strncasecmp(const char *s1, const char *s2, size_t n)

Case-insensitive comparison of two zero-terminated strings, narrowed to the specified number of chara...

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

const char * data(void) const

Return a pointer to the array represented.

static double StringToDoublePosix(const char *str, char **endptr=0, TStringToNumFlags flags=0)

Convert string to double-precision value (analog of strtod function)

static CStringUTF8 AsUTF8(const CTempString &src, EEncoding encoding, EValidate validate=eNoValidate)

Convert into UTF8 from a C/C++ string.

size_type size(void) const

Return the length of the represented array.

static bool EvaluateFirst(char ch, SIZE_TYPE &more)

Check that the character is valid first byte of an UTF8 byte sequence.

@ fDecimalPosixFinite

StringToDouble*(): Keep result finite and normalized: if DBL_MAX < result < INF, result becomes DBL_M...

const CItemsInfo & GetItems(void) const

TObjectPtr AddElement(TObjectPtr containerPtr, TConstObjectPtr elementPtr, ESerialRecursionMode how=eRecursive) const

const CItemsInfo & GetVariants(void) const

const CVariantInfo * GetVariantInfo(TMemberIndex index) const

void ReadData(CObjectIStream &in, TObjectPtr object) const

TConstObjectPtr GetElementPtr(const CConstIterator &it) const

bool InitIterator(CConstIterator &it, TConstObjectPtr containerPtr) const

bool NextElement(CConstIterator &it) const

void EraseAllElements(CIterator &it) const

const CItemsInfo & GetMembers(void) const

TTypeInfo GetElementType(void) const

enum ENcbiOwnership EOwnership

Ownership relations between objects.

static void hex(unsigned char c)

static void byte(MDB_val *v)

constexpr bool empty(list< Ts... >) noexcept

const struct ncbi::grid::netcache::search::fields::SIZE size

const GenericPointer< typename T::ValueType > T2 value

Floating-point support routines.

Useful/utility classes and methods.

std::istream & in(std::istream &in_, double &x_)

#define SkipClassSequentialContentsEnd()

#define SkipClassRandomContentsMember()

#define ReadClassSequentialContentsEnd(classPtr)

#define SkipClassSequentialContentsBegin(classType)

#define ReadClassRandomContentsBegin(classType)

#define ReadClassSequentialContentsMember(classPtr)

#define ReadClassSequentialContentsBegin(classType)

#define ReadClassRandomContentsMember(classPtr)

#define SkipClassSequentialContentsMember()

#define SkipClassRandomContentsEnd()

#define SkipClassRandomContentsBegin(classType)

#define ReadClassRandomContentsEnd()

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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