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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/objects_2taxon1_2utils_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/taxon1/utils.cpp Source File

49 #define TXC_INH_DIV 0x4000000 50 #define TXC_INH_GC 0x8000000 51 #define TXC_INH_MGC 0x10000000 53 #define TXC_SUFFIX 0x20000000 54 #define TXC_UPDATED 0x20000000 55 #define TXC_UNCULTURED 0x20000000 57 #define TXC_GBHIDE 0x40000000 58 #define TXC_STHIDE 0x80000000 63  return

((m_ref->GetCde())&0xff)-1;

69  return

(m_ref->GetCde()>>8)&0x3f;

75  return

(m_ref->GetCde()>>(8+6))&0x3f;

81  return

(m_ref->GetCde()>>(8+6+6))&0x3f;

101  return

m_name.size()+10 == vt->GetDb().size() &&

111  string

sProp =

"taxlookup$"

+prop_name;

114

pDb->SetTag().SetStr( prop_val );

118

COrg_ref::TDb::iterator

i

= find_if( org.

SetDb

().begin(), org.

SetDb

().end(), ppdb );

119  if

(

i

!= org.

SetDb

().end() ) {

124

org.

SetDb

().push_back( pDb );

130  string

sProp =

"taxlookup%"

+prop_name;

133

pDb->SetTag().SetId( prop_val );

137

COrg_ref::TDb::iterator

i

= find_if( org.

SetDb

().begin(), org.

SetDb

().end(), ppdb );

138  if

(

i

!= org.

SetDb

().end() ) {

143

org.

SetDb

().push_back( pDb );

149  string

sProp =

"taxlookup?"

+prop_name;

152

pDb->SetTag().SetId( prop_val ? 1 : 0 );

156

COrg_ref::TDb::iterator

i

= find_if( org.

SetDb

().begin(), org.

SetDb

().end(), ppdb );

157  if

(

i

!= org.

SetDb

().end() ) {

162

org.

SetDb

().push_back( pDb );

170

COrg_ref::TDb::const_iterator

i

= find_if( org.

GetDb

().begin(), org.

GetDb

().end(), ppdb );

171  return i

!= org.

GetDb

().end();

181

COrg_ref::TDb::const_iterator

i

= find_if( org.

GetDb

().begin(), org.

GetDb

().end(), ppdb );

182  if

(

i

!= org.

GetDb

().end() && (*i)->IsSetTag() && (*i)->GetTag().IsStr() ) {

183  return

(*i)->GetTag().GetStr();

195

COrg_ref::TDb::const_iterator

i

= find_if( org.

GetDb

().begin(), org.

GetDb

().end(), ppdb );

196  if

(

i

!= org.

GetDb

().end() && (*i)->IsSetTag() && (*i)->GetTag().IsId() ) {

197  return

(*i)->GetTag().GetId() != 0;

209

COrg_ref::TDb::const_iterator

i

= find_if( org.

GetDb

().begin(), org.

GetDb

().end(), ppdb );

210  if

(

i

!= org.

GetDb

().end() && (*i)->IsSetTag() && (*i)->GetTag().IsId() ) {

211  return

(*i)->GetTag().GetId();

222  for

( COrg_ref::TDb::iterator

i

= org.

SetDb

().begin();

i

!= org.

SetDb

().end(); ) {

223  if

( prop_name.size()+10 == (*i)->GetDb().size() &&

static const std::string & GetOrgrefProp(const ncbi::objects::COrg_ref &org, const std::string &prop_name)

static int GetOrgrefPropInt(const ncbi::objects::COrg_ref &org, const std::string &prop_name)

static bool GetOrgrefPropBool(const ncbi::objects::COrg_ref &org, const std::string &prop_name)

static void SetOrgrefProp(ncbi::objects::COrg_ref &org, const std::string &prop_name, const std::string &prop_val)

static void RemoveOrgrefProp(ncbi::objects::COrg_ref &org, const std::string &prop_name)

static bool HasOrgrefProp(const ncbi::objects::COrg_ref &org, const std::string &prop_name)

virtual TTaxGeneticCode GetMGC() const

virtual TTaxGeneticCode GetGC() const

virtual TTaxRank GetRank() const

virtual TTaxDivision GetDivision() const

virtual bool IsGenBankHidden() const

virtual bool IsUncultured() const

PPredDbTagByName(const string &sName)

bool operator()(const COrg_ref::TDb::value_type &vt) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static const string & Get(void)

Get string.

bool IsSetDb(void) const

ids in taxonomic or culture dbases Check if a value has been assigned to Db data member.

TDb & SetDb(void)

Assign a value to Db data member.

const TDb & GetDb(void) const

Get the Db member data.

double value_type

The numeric datatype used by the parser.

short int TTaxRank

Primitive types for some taxon1 object fields.

short int TTaxGeneticCode

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