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NCBI C++ ToolKit: include/objmgr/split/object_splitinfo.hpp Source File

vector< CRef<CLocObjects_SplitInfo> >

;

User-defined methods of the data storage class.

CConstRef< CObject > m_Object

TAnnotPriority CalcPriority(void) const

CAnnotObject_SplitInfo(void)

TAnnotPriority GetPriority(void) const

int Compare(const CAnnotObject_SplitInfo &other) const

TAnnotPriority m_Priority

TAnnotPriority m_Priority

CBioseq_SplitInfo(const CBioseq &bioseq, const SSplitterParams &params)

bool CanSplit(void) const

CConstRef< CBioseq > m_Bioseq

TAnnotPriority GetPriority(void) const

vector< CAnnotObject_SplitInfo > TObjects

const_iterator end(void) const

TObjects::const_iterator const_iterator

CNcbiOstream & Print(CNcbiOstream &out) const

const_iterator begin(void) const

void Add(const CAnnotObject_SplitInfo &obj)

map< CConstRef< CSeq_annot >, CSeq_annot_SplitInfo > TSeq_annots

CRef< CSeq_inst_SplitInfo > m_Inst

vector< CBioseq_SplitInfo > TBioseqs

CRef< CSeq_descr_SplitInfo > m_Descr

CRef< CSeq_hist_SplitInfo > m_Hist

CRef< CBioseq_set > m_Bioseq_set

CNcbiOstream & Print(CNcbiOstream &out) const

vector< CRef< CLocObjects_SplitInfo > > TObjects

TAnnotPriority m_TopPriority

void SetSeq_annot(const CSeq_annot &annot, const SSplitterParams &params, const CBlobSplitterImpl &impl)

CConstRef< CSeq_annot > m_Src_annot

void Add(const CAnnotObject_SplitInfo &obj)

static CAnnotName GetName(const CSeq_annot &annot)

TAnnotPriority m_NamePriority

CSeq_annot_SplitInfo(void)

TAnnotPriority GetPriority(void) const

int Compare(const CSeq_annot_SplitInfo &other) const

static size_t CountAnnotObjects(const CSeq_annot &annot)

TAnnotPriority m_Priority

CConstRef< CSeq_data > m_Data

TRange GetRange(void) const

TAnnotPriority GetPriority(void) const

void SetSeq_data(const CPlaceId &place_id, const TRange &range, TSeqPos seq_length, const CSeq_data &data, const SSplitterParams &params)

CSeq_descr_SplitInfo(const CPlaceId &place_id, TSeqPos seq_length, const CSeq_descr &descr, const SSplitterParams &params)

TAnnotPriority m_Priority

CConstRef< CSeq_descr > m_Descr

int Compare(const CSeq_descr_SplitInfo &other) const

TAnnotPriority GetPriority(void) const

vector< CRef< CSeq_descr_SplitInfo > > m_SubPieces

@Seq_descr.hpp User-defined methods of the data storage class.

namespace ncbi::objects::

TAnnotPriority GetPriority(void) const

TAnnotPriority m_Priority

CSeq_hist::TAssembly TAssembly

CSeq_hist_SplitInfo(const CPlaceId &place_id, const CSeq_hist &hist, const SSplitterParams &params)

vector< CSeq_data_SplitInfo > TSeq_data

CConstRef< CSeq_inst > m_Seq_inst

void Add(const CSeq_data_SplitInfo &data)

pair< TDataSize, TDataSize > TSizeRatio

Include a standard set of the NCBI C++ Toolkit most basic headers.

std::ofstream out("events_result.xml")

main entry point for tests

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

list< CRef< CSeq_align > > TAssembly

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

@ eAnnotPriority_skeleton

@ eAnnotPriority_landmark

CNcbiOstream & operator<<(CNcbiOstream &out, const CLocObjects_SplitInfo &info)

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