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NCBI C++ ToolKit: src/gui/objutils/obj_event.cpp Source File

, m_HasRangeSelection(

)

, m_HasObjectSelection(

)

feat_key =

(

).name();

align_key =

(

).name();

loc_key =

(

).name();

id_key =

(

).name();

vcf_variant_key =

(

).name();

sel_id->

(*it->first.GetSeqId());

(it_r->first.NotEmpty()) {

ranges.push_back(it_r->first);

(! ranges.empty()) {

type_info&

=

(obj);

type_info&

=

(obj);

(it->second.begin(), it->second.end(), back_inserter(objs));

objs.push_back(TR(&**it_feat));

objs.push_back(TR(&**it_align));

objs.push_back(TR(&**it_loc));

objs.push_back(TR(&**it_id));

objs.push_back(TR(&**it_loc));

objs.push_back(TR(&**it_vcf_variant));

(&obj1 == &obj2) {

type_info& info2 =

(obj2);

name2 = info2.name();

: id2 =

*

(&obj2);

;

type_info& info1 =

(obj1);

name1 = info1.name();

feat1 =

*

(&obj1);

align1 =

*

(&obj1);

loc1 =

*

(&obj1);

id1 =

*

(&obj1);

vcf_variant1 =

*

(&obj1);

vcf_variant1->

(*vcf_variant2);

&feat1 == &feat2 || feat1.

(feat2);

&align1 == &align2 || align1.

(align2);

&loc1 == &loc2 || loc1.

(loc2);

( ; id_it; ++id_it) {

(id_set.

(id2h) != id_set.

()) {

(

(*iter->GetSeqId(), scope1, id2, scope2)) {

vector<CSeq_id_Handle> ids1 = scope1.

(sel_id);

vector<CSeq_id_Handle> ids2 = scope2.

(

);

(ids1.size() == ids2.size()) {

(ids1.begin(), ids1.end());

(ids2.begin(), ids2.end());

(

= 0;

< ids1.size();

++ ) {

}

;

vector<CSeq_id_Handle> ids1 = scope1.

(sel_id);

vector<CSeq_id_Handle> ids2 = scope2.

(

);

(

= 0;

< ids1.size();

++ ) {

(

j = 0; j < ids2.size(); j++) {

objects::CSeq_id_Handle& h_id)

h_sel_id.MatchesTo(h_id) || h_id.MatchesTo(h_sel_id);

h_sel_id == h_id;

static CRef< CScope > m_Scope

CConstRef< objects::CSeq_id > m_Id

CRange< TSeqPos > m_Range

vector< CConstRef< objects::CSeq_id > > TIds

static bool MatchIdWithId(const objects::CSeq_id &id1, objects::CScope &scope1, const objects::CSeq_id &id2, objects::CScope &scope2)

static bool sm_MatchByProduct

bool HasRangeSelection() const

Range Selection - represents a collection of selected segments.

static bool MatchAlignWithAlign(const objects::CSeq_align &align1, objects::CScope &scope1, const objects::CSeq_align &align2, objects::CScope &scope2)

static EObjMatchPolicy sm_ObjMatchPolicy

static bool sm_TreeBroadcastOneToOne

Node properties used to compare trees when broadcasting.

bool m_HasObjectSelection

static bool MatchFeatWithId(const objects::CSeq_feat &feat1, objects::CScope &scope1, const objects::CSeq_id &id2, objects::CScope &scope2)

void AddTaxIDSelection(TTaxId tid)

vector< CConstRef< objects::CSeq_loc > > TSeqLocs

static bool sm_InterDocBroadcast

objects::CHandleRangeMap m_RangeMap

vector< CConstRef< objects::CSeq_feat > > TFeats

static bool sm_MatchAlnLocs

void GetAllObjects(TConstObjects &objs) const

void GetOther(TConstObjects &objs) const

static bool sm_AutoBroadcast

void AddRangeSelection(const objects::CSeq_id &id, const TRangeColl &segs)

void GetIndexed(const string &area_name, TConstObjects &objs) const

Get Objects from the private broadcasting area (caller has to make sure output objs is empty)

static bool Match(const CObject &obj1, objects::CScope &scope1, const CObject &obj2, objects::CScope &scope2)

CRef< objects::CScope > m_Scope

static bool MatchFeatWithFeat(const objects::CSeq_feat &feat1, objects::CScope &scope1, const objects::CSeq_feat &feat2, objects::CScope &scope2)

TVcfVariants m_VcfVariants

vector< CConstRef< objects::CSeq_align > > TAligns

static bool MatchLocWithId(const objects::CSeq_loc &loc1, objects::CScope &scope1, const objects::CSeq_id &id2, objects::CScope &scope2)

void GetRangeSelectionAsLocs(TConstObjects &objs) const

static vector< string > sm_TreeBroadcastProperties

broadcast sel. between documents

static EIdMatchPolicy sm_IdMatchPolicy

vector< CConstRef< CIdLoc > > TIdLocs

void AddIndexed(const string &area_name, const CObject &obj)

Add private selection broadcasting info.

static bool MatchFeatWithLoc(const objects::CSeq_feat &feat1, objects::CScope &scope1, const objects::CSeq_loc &loc2, objects::CScope &scope2)

static bool x_SimpleMatch(const objects::CSeq_id_Handle &h_sel_id, const objects::CSeq_id_Handle &h_id)

Matches two ids using current policy; does not consider synonyms.

vector< CConstRef< objects::CVcfVariant > > TVcfVariants

const objects::CHandleRangeMap & GetRangeSelection() const

bool HasObjectSelection()

Object Selection - represents select Objects (such as features, alignments, etc)

static TRawNameToType sm_RawNameToType

bool AddObjectSelection(const CObject &obj)

CSelectionEvent(objects::CScope &scope)

static bool MatchLocWithLoc(const objects::CSeq_loc &loc1, objects::CScope &scope1, const objects::CSeq_loc &loc2, objects::CScope &scope2)

vector< CConstRef< CObject > > TOther

namespace ncbi::objects::

void SelectTaxId(TTaxId tid)

Template class for iteration on objects of class C (non-medifiable version)

container_type::const_iterator const_iterator

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

const_iterator end() const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Info(CExceptionArgs_Base &args)

static bool GetRangeCollection(const objects::CSeq_id &id, const objects::CHandleRangeMap &map, CRangeCollection< TSeqPos > &ranges)

bool WeakMatch(const CVcfVariant &right) const

vector< CConstRef< CObject > > TConstObjects

virtual bool Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const

Check if both objects contain the same values.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Optimized implementation of CSerialObject::Assign, which is not so efficient.

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

CPacked_seqint::TRanges TRanges

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

TIds GetIds(const CSeq_id &id, TGetFlags flags=0)

Get "native" bioseq ids without filtering and matching.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

double Elapsed(void) const

Return time elapsed since first Start() or last Restart() call (in seconds).

void Start(void)

Start the timer.

const TLocation & GetLocation(void) const

Get the Location member data.

bool CanGetLocation(void) const

Check if it is safe to call GetLocation method.

const TProduct & GetProduct(void) const

Get the Product member data.

bool CanGetProduct(void) const

Check if it is safe to call GetProduct method.

bool IsSetProduct(void) const

product of process Check if a value has been assigned to Product data member.

@ eNa_strand_both

in forward orientation

constexpr auto sort(_Init &&init)

Defines: CTimeFormat - storage class for time format.

void copy(Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)

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