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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/nwa_8hpp_source.html below:

NCBI C++ ToolKit: src/app/nw_aligner/nwa.hpp Source File

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Go to the SVN repository for this file.

1 #ifndef ALGO_ALIGN_NW__NWA_APP__HPP 2 #define ALGO_ALIGN_NW__NWA_APP__HPP 64  switch

( GetErrCode() ) {

66  return "Cannot read from file"

;

67  case

eCannotWriteFile:

68  return "Cannot write to file"

;

69  case

eInconsistentParameters:

70  return "Two or more parameters are inconsistent"

;

72  return "Feature not supported"

;

97

vector<char>* sequence)

const

;

NCBI_EXCEPTION_DEFAULT(CAppNWAException, CException)

virtual const char * GetErrCodeString(void) const override

Get error code interpreted as text.

@ eInconsistentParameters

virtual int Run()

Run the application.

CRef< objects::CSeq_id > x_ReadFastaFile(const string &filename, vector< char > *sequence) const

virtual void Exit()

Cleanup on application exit.

virtual void Init()

Initialize the application.

EErrCode

Error types that an application can generate.

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

Defines command line argument related classes.

Defines unified interface to application:

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