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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/nwbandaligner_8hpp_source.html below:

1 #ifndef ALGO_ALIGN___NW_BAND_ALIGNER__HPP 2 #define ALGO_ALIGN___NW_BAND_ALIGNER__HPP 62 const char

* seq2,

size_t

len2,

74 void SetBand

(

size_t

band) { m_band = band; }

78 size_t GetBand

(

void

)

const

{

return

m_band; }

79

pair<Uint1,size_t> GetShift(

void

)

const

;

virtual bool x_CheckMemoryLimit(void)

void SetBand(size_t band)

virtual TScore x_Align(SAlignInOut *data)

CBandAligner(size_t band=0)

virtual ~CBandAligner(void)

size_t GetBand(void) const

void x_DoBackTrace(const CBacktraceMatrix4 &backtrace, SAlignInOut *data)

uint8_t Uint1

1-byte (8-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_XALGOALIGN_EXPORT

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