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NCBI C++ ToolKit: src/algo/blast/gumbel_params/njn_localmaxstatmatrix.hpp Source File

1 #ifndef ALGO_BLAST_GUMBEL_PARAMS__INCLUDED_NJN_LOCALMAXSTATMATRIX 2 #define ALGO_BLAST_GUMBEL_PARAMS__INCLUDED_NJN_LOCALMAXSTATMATRIX 64 size_t

dimMatrix_ = 0,

65 const Int4

const

*scoreMatrix_ = 0,

67 const double

*p2_ = 0,

68 size_t

dimMatrix2_ = 0,

70

LocalMaxStat

(), d_dimMatrix (0), d_scoreMatrix_p (0), d_p_p (0), d_p2_p (0), d_dimMatrix2 (0)

73 copy

(dimMatrix_, scoreMatrix_, p_, p2_, dimMatrix2_);

80 if

(

this

!= &localMaxStat_)

copy

(localMaxStat_);

86 const Int4

const

*scoreMatrix_,

88 const double

*p2_ = 0,

89 size_t

dimMatrix2_ = 0);

94 const Int4

const

*scoreMatrix_,

96 const double

*p2_ = 0,

97 size_t

dimMatrix2_ = 0);

104 using

LocalMaxStat::operator

bool

;

127 inline const double

getP

()

const

{

return

d_p_p;}

128 inline const double

getP2

()

const

{

return

d_p2_p;}

139 void init

(

size_t

dimMatrix_,

size_t

dimMatrix2_ = 0);

const Int4 *const * getScoreMatrix() const

const double * getP2() const

size_t getDimMatrix() const

size_t getDimMatrix2() const

const double * getP() const

LocalMaxStatMatrix(size_t dimMatrix_=0, const Int4 *const *scoreMatrix_=0, const double *p_=0, const double *p2_=0, size_t dimMatrix2_=0, double time_=0)

void copy(const LocalMaxStatMatrix &localMaxStatMatrix_)

double getThetaMin() const

std::ostream & out(std::ostream &ostr_) const

double getThetaMinusDelta() const

double getMuAssoc() const

const double * getProb() const

const Int4 * getScore() const

double getMeanWDLE() const

double getSigmaAssoc() const

size_t getDimension() const

double getR(double theta_) const

static void DLIST_NAME() init(DLIST_LIST_TYPE *list)

int32_t Int4

4-byte (32-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

The NCBI C++/STL use hints.

void copy(Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)

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