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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/njn__localmaxstat_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/blast/gumbel_params/njn_localmaxstat.cpp Source File

107 double

thetaMinusDelta_,

150  throw

Sls::error(

"The regime is not logarithmic\n"

,3);

164  for

(

i

= 0;

i

< dimension_;

i

++)

166  d_sigma

+=

static_cast <double>

(score_ [

i

]) *

static_cast <double>

(score_ [

i

]) * prob_ [

i

];

205  double

eSumAlpha_ = 0.0;

206  double

eOneMinusExpSumAlpha_ = 0.0;

208

&eSumAlpha_, &eOneMinusExpSumAlpha_,

false

,

214  double

ratio = eOneMinusExpSumAlpha_ / eSumAlpha_;

void init(size_t dimension_)

double getThetaMin() const

bool getTerminated() const

void copy(size_t dimension_, const Int4 *score_, const double *prob_)

double getThetaMinusDelta() const

double getMuAssoc() const

const double * getProb() const

const Int4 * getScore() const

double getMeanWDLE() const

size_t getDimension() const

double getR(double theta_) const

int32_t Int4

4-byte (32-bit) signed integer

The NCBI C++/STL use hints.

double muAssoc(size_t dimension_, const Int4 *score_, const double *prob_, double lambda_=0.0)

Int4 delta(size_t dimension_, const Int4 *score_)

double mu(size_t dimension_, const Int4 *score_, const double *prob_)

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

double lambda(size_t dimMatrix_, const Int4 *const *scoreMatrix_, const double *q_)

void descendingLadderEpoch(size_t dimension_, const Int4 *score_, const double *prob_, double *eSumAlpha_=0, double *eOneMinusExpSumAlpha_=0, bool isStrict_=false, double lambda0_=0.0, double mu0_=0.0, double muAssoc0_=0.0, double thetaMin0_=0.0, double rMin0_=0.0, double time_=0.0, bool *terminated_=0)

double rMin(size_t dimension_, const Int4 *score_, const double *prob_, double lambda_=0.0, double thetaMin_=0.0)

double thetaMinusDelta(double lambda_, size_t dimension_, const Int4 *score_)

double thetaMin(size_t dimension_, const Int4 *score_, const double *prob_, double lambda_=0.0)

bool isLogarithmic(size_t dimension_, const Int4 *score_, const double *prob_)

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