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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/ngalignblastpanel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_alignment/ngalign_blast_panel.cpp Source File

47 #include <wx/stattext.h> 48 #include <wx/statbox.h> 49 #include <wx/checkbox.h> 50 #include <wx/choice.h> 51 #include <wx/button.h> 52 #include <wx/dialog.h> 53 #include <wx/msgdlg.h> 56 #include "wx/bitmap.h" 89

SetExtraStyle(wxWS_EX_VALIDATE_RECURSIVELY|wxWS_EX_BLOCK_EVENTS);

97

GetSizer()->SetSizeHints(

this

);

125

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

126

itemCAlgoToolManagerParamsPanel1->SetSizer(itemBoxSizer2);

128

wxStaticText* itemStaticText3 =

new

wxStaticText( itemCAlgoToolManagerParamsPanel1, wxID_STATIC,

(

"Selected options:"

), wxDefaultPosition, wxDefaultSize, 0 );

129

itemBoxSizer2->Add(itemStaticText3, 0, wxALIGN_LEFT|wxALL, 5);

131

wxBoxSizer* itemBoxSizer4 =

new

wxBoxSizer(wxHORIZONTAL);

132

itemBoxSizer2->Add(itemBoxSizer4, 0, wxGROW|wxALL, 5);

134

wxStaticBox* itemStaticBoxSizer5Static =

new

wxStaticBox(itemCAlgoToolManagerParamsPanel1,

wxID_ANY

(

"General Parameters"

));

135

wxStaticBoxSizer* itemStaticBoxSizer5 =

new

wxStaticBoxSizer(itemStaticBoxSizer5Static, wxVERTICAL);

136

itemBoxSizer4->Add(itemStaticBoxSizer5, 0, wxGROW|wxALL, 5);

138

wxFlexGridSizer* itemFlexGridSizer6 =

new

wxFlexGridSizer(0, 2, 0, 0);

139

itemStaticBoxSizer5->Add(itemFlexGridSizer6, 1, wxGROW|wxALL, 5);

141

wxStaticText* itemStaticText7 =

new

wxStaticText( itemStaticBoxSizer5->GetStaticBox(), wxID_STATIC,

(

"Word size:"

), wxDefaultPosition, wxDefaultSize, 0 );

142

itemFlexGridSizer6->Add(itemStaticText7, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

144

wxTextCtrl* itemTextCtrl8 =

new

wxTextCtrl( itemStaticBoxSizer5->GetStaticBox(),

ID_WORDSIZE

, wxEmptyString, wxDefaultPosition, wxDefaultSize, 0 );

145

itemFlexGridSizer6->Add(itemTextCtrl8, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

147

wxStaticText* itemStaticText9 =

new

wxStaticText( itemStaticBoxSizer5->GetStaticBox(), wxID_STATIC,

(

"e-value"

), wxDefaultPosition, wxDefaultSize, 0 );

148

itemFlexGridSizer6->Add(itemStaticText9, 0, wxALIGN_RIGHT|wxALIGN_CENTER_VERTICAL|wxALL, 5);

150

wxTextCtrl* itemTextCtrl10 =

new

wxTextCtrl( itemStaticBoxSizer5->GetStaticBox(),

ID_E_VALUE

, wxEmptyString, wxDefaultPosition, wxDefaultSize, 0 );

151

itemFlexGridSizer6->Add(itemTextCtrl10, 0, wxALIGN_CENTER_HORIZONTAL|wxGROW|wxALL, 5);

153

itemFlexGridSizer6->AddGrowableCol(1);

155

wxCheckBox* itemCheckBox11 =

new

wxCheckBox( itemStaticBoxSizer5->GetStaticBox(),

ID_CHECKBOX13

(

"Use BLAST best hit algorithm"

), wxDefaultPosition, wxDefaultSize, 0 );

156

itemCheckBox11->SetValue(

false

);

157

itemStaticBoxSizer5->Add(itemCheckBox11, 0, wxALIGN_LEFT|wxALL, 5);

159

wxStaticBox* itemStaticBoxSizer12Static =

new

wxStaticBox(itemCAlgoToolManagerParamsPanel1,

wxID_ANY

(

"Filtering Parameters"

));

160

wxStaticBoxSizer* itemStaticBoxSizer12 =

new

wxStaticBoxSizer(itemStaticBoxSizer12Static, wxVERTICAL);

161

itemBoxSizer4->Add(itemStaticBoxSizer12, 1, wxGROW|wxALL, 5);

163

wxBoxSizer* itemBoxSizer13 =

new

wxBoxSizer(wxHORIZONTAL);

164

itemStaticBoxSizer12->Add(itemBoxSizer13, 0, wxGROW|wxALL, 5);

166

wxStaticText* itemStaticText14 =

new

wxStaticText( itemStaticBoxSizer12->GetStaticBox(), wxID_STATIC,

(

"Tune search for:"

), wxDefaultPosition, wxDefaultSize, 0 );

167

itemBoxSizer13->Add(itemStaticText14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

169

wxArrayString itemChoice15Strings;

170

itemChoice15Strings.Add(

(

"Phase 1 HTG Sequences"

));

171

itemChoice15Strings.Add(

(

"Finished clones"

));

172

itemChoice15Strings.Add(

(

"Curated genomic sequences(NGs)"

));

173

wxChoice* itemChoice15 =

new

wxChoice( itemStaticBoxSizer12->GetStaticBox(),

ID_CHOICE5

, wxDefaultPosition, wxDefaultSize, itemChoice15Strings, 0 );

174

itemBoxSizer13->Add(itemChoice15, 1, wxALIGN_CENTER_VERTICAL|wxALL, 5);

176

wxStaticBox* itemStaticBoxSizer16Static =

new

wxStaticBox(itemCAlgoToolManagerParamsPanel1,

wxID_ANY

(

"Windowmasker filtering"

));

180 m_WMStatic

new

wxStaticText(

m_WMStaticBoxSizer

->GetStaticBox(), wxID_STATIC,

(

"Windowmasker tax IDs:"

), wxDefaultPosition, wxDefaultSize, 0 );

183

wxArrayString m_WMTaxIdsStrings;

192

wxStaticBox* itemStaticBoxSizer21Static =

new

wxStaticBox(itemCAlgoToolManagerParamsPanel1,

wxID_ANY

(

"Advanced Parameters (standard MegaBLAST parameters are honored)"

));

193

wxStaticBoxSizer* itemStaticBoxSizer21 =

new

wxStaticBoxSizer(itemStaticBoxSizer21Static, wxHORIZONTAL);

194

itemBoxSizer2->Add(itemStaticBoxSizer21, 0, wxGROW|wxALL, 5);

196

wxTextCtrl* itemTextCtrl22 =

new

wxTextCtrl( itemStaticBoxSizer21->GetStaticBox(),

ID_ADV_TEXT

, wxEmptyString, wxDefaultPosition, wxDefaultSize, 0 );

197

itemStaticBoxSizer21->Add(itemTextCtrl22, 1, wxALIGN_CENTER_VERTICAL|wxALL, 5);

199

wxBoxSizer* itemBoxSizer23 =

new

wxBoxSizer(wxHORIZONTAL);

200

itemBoxSizer2->Add(itemBoxSizer23, 0, wxGROW|wxALL, 5);

202

wxStaticText* itemStaticText24 =

new

wxStaticText( itemCAlgoToolManagerParamsPanel1, wxID_STATIC,

(

"Job Title:"

), wxDefaultPosition, wxDefaultSize, 0 );

203

itemBoxSizer23->Add(itemStaticText24, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

205

wxTextCtrl* itemTextCtrl25 =

new

wxTextCtrl( itemCAlgoToolManagerParamsPanel1,

ID_TITLE_TEXT

, wxEmptyString, wxDefaultPosition, wxDefaultSize, 0 );

206

itemBoxSizer23->Add(itemTextCtrl25, 1, wxALIGN_CENTER_VERTICAL|wxALL, 5);

211

itemCheckBox11->SetValidator( wxGenericValidator(&

GetData

().m_BestHit) );

212

itemChoice15->SetValidator( wxGenericValidator(&

GetData

().m_FilterMode) );

213

itemTextCtrl22->SetValidator( wxGenericValidator(&

GetData

().m_AdvParams) );

214

itemTextCtrl25->SetValidator( wxGenericValidator(&

GetData

().m_JobTitle) );

217

wxStaticText* loadingText =

new

wxStaticText(

m_WMStaticBoxSizer

->GetStaticBox(),

ID_LOADING_TEXT

wxT

(

"Windomasker tax ID: none. Loading..."

), wxDefaultPosition, wxDefaultSize, 0);

218

wxFont bold(wxNORMAL_FONT->GetPointSize(), wxNORMAL_FONT->GetFamily(), wxNORMAL_FONT->GetStyle(), wxFONTWEIGHT_BOLD, wxNORMAL_FONT->GetUnderlined(), wxNORMAL_FONT->GetFaceName());

219

loadingText->SetFont(bold);

220

loadingText->SetForegroundColour(*wxBLACK);

234 return

CAlgoToolManagerParamsPanel::TransferDataToWindow();

247 if

local

)

return

;

260

GetSizer()->Layout();

265 int

taxId = 0, index =

m_WMTaxIds

->GetSelection();

266 if

(wxNOT_FOUND != index)

272 string

wmDir(storage.

GetPath

().ToUTF8());

276 return

CAlgoToolManagerParamsPanel::TransferDataFromWindow();

void RestoreDefaults()

override in derived classes

virtual void TaxonsLoaded(bool local)

wxBitmap GetBitmapResource(const wxString &name)

virtual void LoadSettings()

wxIcon GetIconResource(const wxString &name)

virtual void SaveSettings() const

override in derived classes

bool Create(wxWindow *parent, wxWindowID id=ID_CNGALIGNBLASTPANEL)

wxStaticBoxSizer * m_WMStaticBoxSizer

wxStaticText * m_WMStatic

static bool ShowToolTips()

CNGAlignParams & GetData()

virtual bool TransferDataFromWindow()

void OnWMDownload(wxCommandEvent &event)

virtual bool TransferDataToWindow()

bool FillControl(ICallback *callback, wxControlWithItems &ctrl, bool local, int selectTaxId)

static CTaxIdHelper & GetInstance()

static CWinMaskerFileStorage & GetInstance()

access the application-wide singleton

void SetWMDir(string value)

void SetWMTaxId(int value)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

unsigned int

A callback function used to compare two keys in a database.

USING_SCOPE(ncbi::objects)

#define SYMBOL_CNGALIGNBLASTPANEL_STYLE

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Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/ngalign__blast__panel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_alignment/ngalign_blast_panel.cpp Source File

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/ngalignblastpanel_8cpp_source.html below: