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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/ncbiargs_8cpp_source.html below:

NCBI C++ ToolKit: src/corelib/ncbiargs.cpp Source File

(

& name,

& what,

& attr)

+ what + (attr.empty() ? attr :

+ attr +

);

<<

<<

<<

;

<<

<<

<<

<< endl;

: m_Name(name), m_Ordinal(0), m_Flags(0), m_Standard(

)

+

);

+

);

, ""));

, ""));

,

()));}

,

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,

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(m_Integer < kMin_Int || m_Integer >

) {

,

));

(m_Integer < kMin_Int || m_Integer >

) {

,

));

,

()));

,

));

,

));

* fmt[] = {

(

= 0; !res && fmt[

]; ++

) {

,

));

IOS_BASE::openmode openmode = (IOS_BASE::openmode) 0;

openmode |= IOS_BASE::binary;

openmode |= IOS_BASE::app;

& name,

&

,

m_DescriptionFlags(0),

,

()));

<< \

_ASSERT(!IsStandard()); \

,

()));

( !fstrm->is_open() ) {

& name,

&

,

( !fstrm->is_open() ) {

& name,

&

,

( !fstrm->is_open() ) {

+

);

,

role =

().empty() ?

:

;

<<

<< role <<

;

<<

;

(!constraint.empty()) {

<<

<<

;

<<

;

<<

<<

<<

<< endl;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

;

<<

<<

<<

<< endl;

& comment,

,

));

,

(

) +

+=

;

( !constr.empty() ) {

,

));

err_msg =

;

err_msg =

;

& comment,

& comment,

& default_value,

& env_var,

* display_value)

m_DefaultValue(default_value), m_EnvVar(env_var),

m_use_display(display_value !=

)

&

=

(!

.empty()) {

: m_Synopsis(synopsis)

(string::const_iterator it =

.begin();

(*it !=

&& !

((

)(*it))) {

+

);

& comment,

m_SetValue(set_value)

& comment,

& comment,

& comment,

& comment,

& default_value,

& env_var,

* display_value)

& comment,

& synopsis)

+ name + separator + synopsis;

& comment,

& synopsis)

& comment,

& synopsis,

& default_value,

& env_var,

* display_value)

& arg_name,

& comment)

m_ArgName(arg_name),

m_NegativeFlag(

)

(

!= &other) {

(c) || c ==

|| c ==

;

(arg !=

.

() || name.empty() || name[0] ==

||

(arg !=

.

() || name.empty() || name[0] ==

||

(!name.empty() && name[0] ==

) {

+

(idx == 0 || idx >=

) {

+ name +

);

vector< CRef<CArgValue> > res;

((**a).HasValue()) {

res.push_back( *

);

& arg_name = (*arg)->GetName();

& arg_value = (*this)[arg_name];

+=

;

is_extra =

;

( arg->

().empty() ) {

& v = arg->

();

istreambuf_iterator<char> it(

.AsInputFile() );

vector<char>

;

( it, istreambuf_iterator<char>(), back_inserter(

));

prompt =

;

(!prompt.empty()) {

hIn = GetStdHandle(STD_INPUT_HANDLE);

GetConsoleMode(hIn, &

);

silent_mode =

& ~ENABLE_ECHO_INPUT;

SetConsoleMode(hIn, silent_mode);

( ReadFile(hIn,

, 256, &dw,

) && dw != 0) {

(

[dw-1] ==

||

[dw-1] ==

) {

SetConsoleMode(hIn,

);

termios

, silent_mode;

silent_mode =

;

silent_mode.c_lflag &= ~

;

ich = getchar();

ch = (char) ich;

(ch ==

|| ch ==

)

(

.size() > 0) {

(!prompt.empty()) {

prompt =

;

(!prompt.empty()) {

hOut = CreateFile(

(

),

GENERIC_WRITE, FILE_SHARE_WRITE,

, OPEN_EXISTING,

FILE_ATTRIBUTE_NORMAL,

);

WriteFile(hOut, prompt.data(), (

)prompt.length(), &dw,

);

hIn = CreateFile(

(

),

GENERIC_READ | GENERIC_WRITE, FILE_SHARE_READ,

, OPEN_EXISTING,

FILE_ATTRIBUTE_NORMAL,

);

GetConsoleMode(hIn, &

);

silent_mode =

& ~ENABLE_ECHO_INPUT;

SetConsoleMode(hIn, silent_mode);

( ReadFile(hIn,

, 256, &dw,

) && dw != 0) {

(

[dw-1] ==

||

[dw-1] ==

) {

SetConsoleMode(hIn,

);

WriteFile(hOut, thx.data(), (

)thx.length(), &dw,

);

tty = open(

, O_RDWR);

(!prompt.empty()) {

(write( tty, prompt.data(), prompt.length())) {}

termios

, silent_mode;

tcgetattr( tty, &

);

silent_mode =

;

silent_mode.c_lflag &= ~

;

tcsetattr( tty, TCSANOW, &silent_mode );

( (

= read(tty,

, 256)) > 0) {

(

> 0 && (

[

-1] ==

||

[

-1] ==

)) {

tcsetattr( tty, TCSANOW, &

);

(!prompt.empty()) {

(write( tty, thx.data(), thx.length())) {}

&

)

<< arg_desc.

() <<

);

: m_ArgsType(eRegularArgs),

m_PositionalMode(ePositionalMode_Strict),

m_MiscFlags(fMisc_Default),

m_AutoHelp(auto_help),

m_HasHidden(

),

);

);

);

);

,

(default_config.empty()) {

,

,

,

,

,

,

,

,

,

);

s_TypeName[(

)

];

(

& name,

& synopsis,

& comment,

(

& name,

& synopsis,

& comment,

(

& name,

& synopsis,

& comment,

& default_value,

& env_var,

* display_value)

comment,

,

, synopsis, default_value, env_var, display_value));

& name,

& comment,

& name,

& comment,

& name,

& comment,

& name,

& comment,

unique_ptr<CArgDesc_PosOpt> arg

& name,

& comment,

& default_value,

& env_var,

* display_value)

comment,

,

, default_value, env_var, display_value));

n_mandatory,

n_optional,

& comment,

(!n_mandatory && !n_optional) {

);

(n_mandatory > 4096) {

);

unique_ptr<CArgDesc_Pos> arg

& arg_name)

unique_ptr<CArgDesc_Alias>arg

& arg_name,

& comment)

+ arg_name);

unique_ptr<CArgDesc_Alias> arg(

(alias, arg_name, comment));

arg->SetNegativeFlag(

);

+ name);

(*it)->SetConstraint(constraint, negate);

+ name);

& arg2)

+ name);

);

( name.empty() ) {

TKeyFlagArgs::iterator it =

TPosArgs::iterator it =

( group.empty() ) {

(TPosArgs::const_iterator name =

.begin();

);

& name = arg.

();

&

=

.GetName();

(

.length() == 1 &&

[0] == name[0] &&

(

) + name[0] +

+

name +

+

+

+ name[0] +

);

name_aliased =

&

(arg).GetAliasedName();

it_aliased =

(name_aliased);

& arg_aliased = **it_aliased;

(25,

<<

<< name <<

<< name_aliased);

);

}

(

exception& e) {

(

) + e.

());

(arg.compare(

(

) +

) == 0) {

}

(arg.compare(

(

) +

) == 0) {

}

(arg.compare(

(

) +

) == 0) {

have_arg2,

& arg2,

* n_plain,

& args)

is_keyflag =

;

argssofar = args.

().size();

((arg1.length() > 1) && arg1[0] ==

) {

name = arg1.substr(1);

= name.find(

);

name = name.substr(0,

);

arg2_used =

;

(*n_plain !=

&& !is_keyflag) {

+

+ arg1);

arg2_used =

(arg1, name, have_arg2, arg2, *n_plain, args);

& name_in,

& arg2,

name(name_in);

arg2_used =

;

no_separator =

;

eq_separator =

;

confidential = it !=

.

() &&

conf_method = confidential ?

:

;

dash = name.rfind(

);

(name.substr(0, dash));

suffix(name.substr(dash+1));

name.size() > (dash+1)) {

confidential =

;

conf_method = name[dash+1];

no_separator =

;

( name.empty() ) {

+

+ name +

);

eq_separator = arg1.length() > name.length() &&

(arg1[name.length() + 1] ==

);

( eq_separator ) {

(

(arg) && !confidential) {

eq_separator = arg1.length() > name.length() &&

(arg1[name.length() + 1] ==

);

( !eq_separator ) {

+ arg1);

name.length() == 1 && arg1.length() > 2;

( !eq_separator && !no_separator ) {

( !

(arg) || (confidential && conf_method ==

)) {

args.

(arg_value, update);

( no_separator ) {

arg_val = arg1.substr(2);

arg_val = arg1.substr(name.length() + 2);

(conf_method) {

allow_multiple =

;

args.

(arg_value, update, allow_multiple);

n_plain,

nameReq, nameExc;

nExtraReq = 0;

nExtraExc = 0;

nEx = 0;

(!args.

(dep->first) || !args[dep->first]) {

( dep->second.m_Dep ) {

require.

(make_pair(dep->second.m_Arg,dep->first));

(dep->second.m_Arg.at(0) ==

) {

(dep->second.m_Arg.data()+1, dep->second.m_Arg.size()-1));

(nEx > nExtraReq) {

nameReq = dep->first;

(args.

(dep->second.m_Arg) && args[dep->second.m_Arg]) {

, dep->first));

exclude.

(dep->second.m_Arg);

(dep->second.m_Arg.at(0) ==

) {

(dep->second.m_Arg.data()+1, dep->second.m_Arg.size()-1));

(nEx > nExtraExc) {

nameExc = dep->first;

(nExtraReq != 0 && nExtraExc != 0 && nExtraReq >= nExtraExc) {

+

nExtra =

(nExtra, nExtraReq);

(nExtraExc > 0) {

nExtra =

(nExtra, nExtraExc-1);

(!args.

(*it)) {

+

list<const CArgDesc*> def_args;

def_args.push_back(&arg);

def_args.push_back(&arg);

->GetPointer()->Evaluate(args);

(list<const CArgDesc*>, it, def_args) {

requester(require.

(arg.

())->second);

, requester));

args.

(arg_exvalue);

args.

(arg_value);

(

& usage_name,

& usage_description,

usage_sort_args,

(usage_name.empty()) {

(usage_width < kMinUsageWidth) {

usage_width = kMinUsageWidth;

<<

usage_width <<

<< kMinUsageWidth);

string::const_iterator it = name.begin();

(extended && *it ==

) {

(++it; it != name.end(); ++it) {

( !

((

)(*it)) ) {

(name[0] ==

) {

(name.length() == 1 || name[1] ==

) {

( ; it != name.end(); ++it) {

& name = arg.

();

(

(name) ) {

+ name);

}

( !

(arg) && !name.empty() ) {

(find(container.begin(), container.end(), name)

== container.end());

container.push_back(name);

TPosArgs::iterator it;

(it = container.begin(); it != container.end(); ++it) {

container.insert(it, name);

name.length() == 1 &&

( !attr.empty() ) {

+=

+ attr +

;

.push_back( intro +

);

.push_back( intro +

+

+=

+ attr +

;

intro +=

+ alias->

();

= intro.find(

);

pair<TDependency_CI, TDependency_CI> dep_rg =

(

dep = dep_rg.first; dep != dep_rg.second; ++dep) {

( dep->second.m_Dep ) {

( !require.empty() ) {

require += dep->second.m_Arg;

( !exclude.empty() ) {

exclude += dep->second.m_Arg;

( !require.empty() ) {

( !exclude.empty() ) {

(

& c2n : comments_to_negatives) {

& negatives = c2n.second;

(list<string>, neg, negatives) {

( !neg_info.empty() ) {

neg_info =

+ neg_info;

neg_comment = c2n.first;

( neg_comment.empty() ) {

neg_comment =

+ arg.

();

list<const CArgDesc*> TList;

TList::iterator TListI;

TListI it_pos =

.begin();

(TPosArgs::const_iterator name = desc.

.begin();

.insert(it_pos, it->get());

TListI& it_opt_keys = it_pos;

TListI it_keys =

.insert(it_pos,

);

TListI it_flags =

.insert(it_pos,

);

.insert(it_opt_keys, arg);

}

(

*

(arg)) {

.insert(it_keys, arg);

.insert(it_flags, arg);

(TKeyFlagArgs::const_iterator name = desc.

.begin();

.insert(it_pos, it->get());

(TPosArgs::const_iterator name = desc.

.begin();

name != desc.

.end(); ++name) {

}

(

*

(arg)) {

.insert(it_pos, arg);

.push_back(it->get());

& intro,

& prefix)

list<const CArgDesc*>::const_iterator it;

(m_desc.GetArgsType() ==

) {

(it = m_args.begin(); it != m_args.end(); ++it) {

& name = (*it)->GetName();

syn.push_back(name+

+synopsis);

syn, m_desc.m_UsageWidth,

,

, 0,

,

+m_desc.m_UsageName+

);

(!intro.empty()) {

syn.push_back(intro);

(it = m_args.begin(); it != m_args.end(); ++it) {

syn.push_back(

+ (*it)->GetUsageSynopsis() +

);

syn.push_back(

+ (*it)->GetUsageSynopsis() +

);

syn.push_back((*it)->GetUsageSynopsis());

( m_desc.m_UsageDescription.empty() ) {

.push_back(

);

.push_back(

);

(detailed && !m_desc.m_DetailedDescription.empty()) ?

m_desc.m_DetailedDescription : m_desc.m_UsageDescription,

m_desc.m_UsageWidth);

max_cmd_len,

detailed)

cmd_full(

);

(

!= aliases->

()) {

cmd_full +=

+

->second +

;

cmd_full +=

( max_cmd_len - cmd_full.size(),

);

cmd_full += m_desc.m_UsageDescription;

.push_back(

(

)+ cmd_full);

AddSynopsis(

,

(max_cmd_len+3,

),

(max_cmd_len+6,

));

list<const CArgDesc*>::const_iterator it;

(it = m_args.begin(); it != m_args.end(); ++it) {

m_desc.x_PrintComment(req, **it, m_desc.m_UsageWidth);

(

grp = 0; grp < m_desc.m_ArgGroups.size(); ++grp) {

list<string> grp_opt;

group_not_empty =

;

( !m_desc.m_ArgGroups[grp].empty() ) {

(m_desc.m_ArgGroups[grp], m_desc.m_UsageWidth, grp_opt,

(it = m_args.begin(); it != m_args.end(); ++it) {

((*it)->GetGroup() == grp) {

m_desc.x_PrintComment(grp_opt, **it, m_desc.m_UsageWidth);

group_not_empty =

;

( group_not_empty ) {

opt.insert(opt.end(), grp_opt.begin(), grp_opt.end());

( !req.empty() ) {

.push_back(

);

.splice(

.end(), req);

( !m_desc.m_nExtra && !opt.empty() ) {

.push_back(

);

.splice(

.end(), opt);

(m_desc.m_nExtra || (m_desc.m_nExtraOpt && m_desc.m_nExtraOpt !=

)) {

str_extra =

;

( m_desc.m_nExtra ) {

(m_desc.m_nExtraOpt)

str_extra +=

;

(m_desc.m_nExtraOpt && m_desc.m_nExtraOpt !=

) {

str_extra +=

;

(m_desc.m_nExtraOpt && m_desc.m_nExtraOpt !=

) {

str_extra +=

;

+

(&

[m_desc.m_nExtra

? m_desc.m_nExtraOpt : 0) == 1]) +

( m_desc.m_nExtra && !opt.empty() ) {

.push_back(

);

.splice(

.end(), opt);

(!m_desc.m_DependencyGroups.empty()) {

.push_back(

);

!= m_desc.m_DependencyGroups.end(); ++

) {

->GetPointer()->PrintUsage(

, 0);

.push_back(

);

.push_back(

);

: m_desc(desc), m_out(

)

<<

<< endl;

<<

<<

<< endl

<<

<< endl

<<

<< endl

<<

<<

<<

;

<<

;

<<

;

<<

<<

<< endl;

<<

<<

<<

<< endl;

m_out <<

<<

<<

<< endl;

m_out <<

<<

;

m_out <<

;

m_out <<

<< endl;

((**a).GetName() == *p) {

= (*a)->PrintXml(m_out);

m_out <<

<<

<<

<< endl;

((**a).GetName() == *p) {

= (*a)->PrintXml(m_out);

m_out <<

<<

<<

<< endl;

= (*a)->PrintXml(m_out);

m_out <<

<<

<<

<< endl;

= (*a)->PrintXml(m_out);

m_out <<

<<

<<

<< endl;

= (*a)->PrintXml(m_out);

m_out <<

<<

<<

<< endl;

m_out <<

<<

<<

<< endl;

m_out <<

<<

<<

<< endl;

m_out <<

<<

<<

<< endl;

m_out <<

<<

<<

<< endl;

m_out <<

<<

<<

<< endl;

m_out <<

<<

<<

<< endl;

!= m_desc.m_DependencyGroups.end(); ++

) {

->GetPointer()->PrintUsageXml(m_out);

m_out <<

<<

<<

<< endl;

& name,

negated

)

= negated ?

:

;

+

);

(!alias.empty()) {

vector<string> candidates;

candidates.push_back(d->first);

(candidates.size() == 1) {

candidates.front();

(argv.

() > 1) {

(argv[1].

()) {

d->second->CreateArgs(argv2)->SetCommand(

);

cmdsize = cmdargs.

();

(

.empty()) {

argdesc = d->second.get();

.push_back(

);

.push_back(

+

+

);

.push_back(

);

.push_back(

(

)+

+

);

.push_back(

);

max_cmd_len = 0;

alias_size=0;

alias_size =

->second.size() + 3;

max_cmd_len =

(max_cmd_len, d->first.size() + alias_size);

cmds.push_back(

.first);

( list<string>, gi, cmdgroups) {

titleprinted =

;

grouptitle =

;

( list<string>, di, cmds) {

(j !=

.

() && j->second == group) {

(!titleprinted) {

.push_back(grouptitle +

);

titleprinted =

;

.push_back(

);

( list<string>, di, cmds) {

.push_back(

);

.push_back(

);

.push_back(

);

<<

<< endl;

<<

<< d->first <<

<< endl;

<<

<< (

.

(d->first)->second) <<

<< endl;

(

,

, d->second->m_DetailedDescription);

<<

<< endl;

<<

<< endl;

<<

<<

<<

<< endl;

<<

<< c <<

<< endl;

<<

<< endl;

.push_back( d->second.get());

& symbol_set)

( symbol_class ) {

symbol_set.find_first_of(ch) !=

;

& symbol_set)

( symbol_class ) {

( symbol_class ) {

( symbol_class);

( symbol_set);

(

.length() != 1)

(!

.empty()) {

+

;

<<

<<

<<

<< endl;

<<

<<

<<

<< endl;

string::const_iterator it;

(it =

.begin(); it !=

.end(); ++it) {

(it ==

.end()) {

(!

.empty()) {

+

;

<<

<<

<<

<< endl;

<<

<<

<<

<< endl;

;

(

.key_comp()(

,

) ) {

+=

;

<<

<<

;

<<

;

(

.key_comp()(

,

) ) {

<<

<< endl;

<<

<<

<<

<< endl;

(

->first <=

&& val<= pi->second) {

(x_min == x_max) {

(!

.empty()) {

(

->first ==

->second) {

(

);

<<

<<

<<

<< endl;

<<

<<

<<

<< endl;

(x_min == x_max) {

(

->first <=

&& val<= pi->second) {

(x_min == x_max) {

(!

.empty()) {

(

->first ==

->second) {

<<

<<

<<

<< endl;

<<

<<

<<

<< endl;

& name,

& description)

gr->m_Description = description;

: m_MinMembers(0), m_MaxMembers(0)

top_level = !arg_set || !arg_unset;

has_instant_set =

;

count_set = 0;

args_set, args_unset;

msg_set, msg_unset;

(

->first.GetPointer()->x_Evaluate(args, &msg_set, &msg_unset)) {

has_instant_set = has_instant_set || (

->second ==

);

names_set.

(msg_set);

names_unset.

(msg_unset);

(args.

(

->first)) {

has_instant_set = has_instant_set || (

->second ==

);

names_set.

(

->first);

names_unset.

(

->first);

(names_set.

() > 1) {

args_set =

+

(names_set,

) +

;

}

(names_set.

() == 1) {

args_set = *names_set.

();

(names_unset.

() > 1) {

}

(names_unset.

() == 1) {

args_unset = *names_unset.

();

= count_set != 0 || top_level;

(count_set > count_max) {

(

);

+= args_set +

;

(

);

(count_total != count_max) {

+= args_unset +

;

*arg_set = args_set;

*arg_unset = args_unset;

off(2*

,

);

list<string> instant;

+=

->first.GetPointer()->m_Name;

instant.push_back(

->first.GetPointer()->m_Name);

instant.push_back(

->first);

= off +

;

}

(count_max == count_total &&

!= 0) {

+=

;

}

(count_max != count_total &&

== 0) {

+=

;

+=

;

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+=

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->first.GetPointer()->PrintUsage(

,

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<<

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->first.GetPointer()->m_Name <<

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->first.GetPointer()->PrintUsageXml(

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ncbi::TMaskedQueryRegions mask

virtual ~CArgDescDefault(void)

virtual void VerifyDefault(void) const

Verify argument default value.

const string & GetDisplayValue(void) const

const string & GetDefaultValue(void) const

CArgDescDefault(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags, const string &default_value, const string &env_var, const char *display_value)

virtual CArgValue * ProcessDefault(void) const

Process argument default.

virtual CArgValue * ProcessArgument(const string &value) const

Process argument with specified value.

CArgDescriptions::EConstraintNegate m_NegateConstraint

CArgDescriptions::EType GetType(void) const

virtual string GetUsageCommentAttr(void) const

Get usage comment attribute.

CConstRef< CArgAllow > m_Constraint

virtual bool IsConstraintInverted() const

Returns TRUE if associated constraint is inverted (NOT)

virtual const CArgAllow * GetConstraint(void) const

Get argument constraint.

virtual void SetConstraint(const CArgAllow *constraint, CArgDescriptions::EConstraintNegate negate)

Set argument constraint.

virtual CArgValue * ProcessDefault(void) const

Process argument default.

CArgDescMandatory(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags)

virtual ~CArgDescMandatory(void)

virtual ~CArgDescOptional(void)

virtual CArgValue * ProcessDefault(void) const

Process argument default.

CArgDescOptional(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags)

const string & GetSynopsis(void) const

CArgDescSynopsis(const string &synopsis)

virtual string GetUsageCommentAttr(void) const

Get usage comment attribute.

virtual string GetUsageSynopsis(bool name_only) const

Get usage synopsis.

const string & GetAliasedName(void) const

virtual CArgValue * ProcessArgument(const string &value) const

Process argument with specified value.

virtual ~CArgDesc_Alias(void)

CArgDesc_Alias(const string &alias, const string &arg_name, const string &comment)

bool GetNegativeFlag(void) const

virtual CArgValue * ProcessDefault(void) const

Process argument default.

virtual ~CArgDesc_Flag(void)

CArgDesc_Flag(const string &name, const string &comment, bool set_value, CArgDescriptions::TFlags flags)

virtual CArgValue * ProcessArgument(const string &value) const

Process argument with specified value.

virtual string GetUsageCommentAttr(void) const

Get usage comment attribute.

bool GetSetValue(void) const

virtual string GetUsageSynopsis(bool name_only=false) const

Get usage synopsis.

virtual CArgValue * ProcessDefault(void) const

Process argument default.

CArgDesc_KeyDef(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags, const string &synopsis, const string &default_value, const string &env_var, const char *display_value)

virtual string GetUsageSynopsis(bool name_only=false) const

Get usage synopsis.

virtual ~CArgDesc_KeyDef(void)

virtual string GetUsageSynopsis(bool name_only=false) const

Get usage synopsis.

virtual ~CArgDesc_KeyOpt(void)

CArgDesc_KeyOpt(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags, const string &synopsis)

CArgDesc_Key(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags, const string &synopsis)

virtual ~CArgDesc_Key(void)

virtual string GetUsageSynopsis(bool name_only=false) const

Get usage synopsis.

virtual CArgValue * ProcessArgument(const string &) const

Process argument with specified value.

virtual CArgValue * ProcessDefault(void) const

Process argument default.

virtual string GetUsageCommentAttr(void) const

Get usage comment attribute.

virtual string GetUsageSynopsis(bool) const

Get usage synopsis.

CArgDesc_NameOnly(const string &name)

virtual ~CArgDesc_Opening(void)

CArgDesc_Opening(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags)

virtual string GetUsageSynopsis(bool name_only=false) const

Get usage synopsis.

CArgDesc_PosDef(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags, const string &default_value, const string &env_var, const char *display_value)

virtual ~CArgDesc_PosDef(void)

virtual ~CArgDesc_PosOpt(void)

CArgDesc_PosOpt(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags)

virtual string GetUsageSynopsis(bool name_only=false) const

Get usage synopsis.

CArgDesc_Pos(const string &name, const string &comment, CArgDescriptions::EType type, CArgDescriptions::TFlags flags)

virtual ~CArgDesc_Pos(void)

virtual bool AsBoolean(void) const

Get the argument's boolean value.

CArg_Boolean(const string &name, bool value)

CArg_DataSize(const string &name, const string &value)

virtual Int8 AsInt8(void) const

Get the argument's integer (8-byte long) value.

virtual const CTime & AsDateTime() const

Get the argument as a DateTime.

CArg_DateTime(const string &name, const string &value)

CArg_Dir(const string &name, const string &value, CArgDescriptions::TFlags flags)

TFileFlags m_DescriptionFlags

virtual const CDir & AsDirectory() const

Get the argument as a directory.

virtual double AsDouble(void) const

Get the argument's double value.

CArg_Double(const string &name, const string &value)

virtual double AsDouble(void) const

Get the argument's double value.

virtual const CDir & AsDirectory(void) const

Get the argument as a directory.

virtual CNcbiIstream & AsInputFile(TFileFlags flags=0) const

Get the argument as an input file stream.

virtual CNcbiIostream & AsIOFile(TFileFlags flags=0) const

Get the argument as a file stream.

virtual bool AsBoolean(void) const

Get the argument's boolean value.

virtual Int8 AsInt8(void) const

Get the argument's integer (8-byte long) value.

virtual bool HasValue(void) const

Check if argument holds a value.

virtual TIntId AsIntId(void) const

Get the argument's value as an integer id (TIntId).

virtual const string & AsString(void) const

Get the argument's string value.

virtual void CloseFile(void) const

Close the file.

virtual int AsInteger(void) const

Get the argument's integer value.

virtual CNcbiOstream & AsOutputFile(TFileFlags flags=0) const

Get the argument as an output file stream.

CArg_ExcludedValue(const string &name)

virtual const CTime & AsDateTime(void) const

Get the argument as a DateTime.

CArg_Flag(const string &name, bool value)

virtual bool HasValue(void) const

Check if argument holds a value.

virtual void x_Open(TFileFlags flags) const

CArg_IOFile(const string &name, const string &value, CArgDescriptions::TFlags flags)

virtual void x_Open(TFileFlags flags) const

CArg_InputFile(const string &name, const string &value, CArgDescriptions::TFlags flags)

virtual Int8 AsInt8(void) const

Get the argument's integer (8-byte long) value.

CArg_Int8(const string &name, const string &value)

virtual TIntId AsIntId(void) const

An Int8 argument can be used as an integer id only if NCBI_INT8_GI is defined.

virtual TIntId AsIntId(void) const

An Int8 argument can be used as an integer id only if NCBI_INT8_GI is defined.

CArg_IntId(const string &name, const string &value)

virtual int AsInteger(void) const

An IntId argument can be used as an integer only if NCBI_INT8_GI is not defined.

virtual TIntId AsIntId(void) const

An integer argument can also be used as an integer id.

CArg_Integer(const string &name, const string &value)

virtual int AsInteger(void) const

Get the argument's integer value.

virtual CNcbiIostream & AsIOFile(TFileFlags flags=0) const

Get the argument as a file stream.

bool x_CreatePath(TFileFlags flags) const

virtual CNcbiOstream & AsOutputFile(TFileFlags flags=0) const

Get the argument as an output file stream.

CArg_Ios(const string &name, const string &value, CArgDescriptions::TFlags flags)

virtual CNcbiIstream & AsInputFile(TFileFlags flags=0) const

Get the argument as an input file stream.

TFileFlags m_DescriptionFlags

virtual void CloseFile(void) const

Close the file.

virtual void x_Open(TFileFlags flags) const

static IOS_BASE::openmode IosMode(TFileFlags flags)

TFileFlags m_CurrentFlags

virtual const string & AsString(void) const

Get the argument's string value.

virtual bool HasValue(void) const

Check if argument holds a value.

CArg_NoValue(const string &name)

virtual Int8 AsInt8(void) const

Get the argument's integer (8-byte long) value.

virtual bool AsBoolean(void) const

Get the argument's boolean value.

virtual const CTime & AsDateTime(void) const

Get the argument as a DateTime.

virtual double AsDouble(void) const

Get the argument's double value.

virtual CNcbiOstream & AsOutputFile(TFileFlags flags=0) const

Get the argument as an output file stream.

virtual CNcbiIstream & AsInputFile(TFileFlags flags=0) const

Get the argument as an input file stream.

virtual CNcbiIostream & AsIOFile(TFileFlags flags=0) const

Get the argument as a file stream.

virtual int AsInteger(void) const

Get the argument's integer value.

virtual const CDir & AsDirectory(void) const

Get the argument as a directory.

virtual TIntId AsIntId(void) const

Get the argument's value as an integer id (TIntId).

virtual void CloseFile(void) const

Close the file.

CArg_OutputFile(const string &name, const string &value, CArgDescriptions::TFlags flags)

virtual void x_Open(TFileFlags flags) const

virtual CNcbiIstream & AsInputFile(TFileFlags flags=0) const

Get the argument as an input file stream.

TStringArray m_StringList

Value of the argument as passed to the constructor ("value") becomes the first element in the value l...

virtual bool AsBoolean(void) const

Get the argument's boolean value.

virtual TIntId AsIntId(void) const

Get the argument's value as an integer id (TIntId).

virtual Int8 AsInt8(void) const

Get the argument's integer (8-byte long) value.

CArg_String(const string &name, const string &value)

virtual const TStringArray & GetStringList() const

Get the value list.

virtual const string & AsString(void) const

Get the argument's string value.

virtual CNcbiIostream & AsIOFile(TFileFlags flags=0) const

Get the argument as a file stream.

virtual int AsInteger(void) const

Get the argument's integer value.

virtual TStringArray & SetStringList()

Get reference on value list for further modification.

virtual bool HasValue(void) const

Check if argument holds a value.

virtual const CTime & AsDateTime(void) const

Get the argument as a DateTime.

virtual double AsDouble(void) const

Get the argument's double value.

virtual const CDir & AsDirectory(void) const

Get the argument as a directory.

virtual CNcbiOstream & AsOutputFile(TFileFlags flags=0) const

Get the argument as an output file stream.

virtual void CloseFile(void) const

Close the file.

Template used to replace bool type arguments with some strict equivalent.

static CNcbiApplication * Instance(void)

Singleton method.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

Define Case-insensitive string comparison methods.

container_type::const_iterator const_iterator

const_iterator begin() const

const_iterator end() const

const_iterator lower_bound(const key_type &key) const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

const_iterator_pair equal_range(const key_type &key) const

iterator insert(const value_type &val)

container_type::value_type value_type

iterator_bool insert(const value_type &val)

const_iterator begin() const

const_iterator find(const key_type &key) const

const_iterator end() const

parent_type::const_iterator const_iterator

void Print(const CCompactSAMApplication::AlignInfo &ai)

static vector< string > arr

std::ofstream out("events_result.xml")

main entry point for tests

static int err_handler(DBPROCESS *dbproc, int severity, int dberr, int oserr, char *dberrstr, char *oserrstr)

#define test(a, b, c, d, e)

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static const char * str(char *buf, int n)

const CNcbiEnvironment & GetEnvironment(void) const

Get the application's cached environment.

static CNcbiApplicationAPI * Instance(void)

Singleton method.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

const string & GetProgramDisplayName(void) const

Get the application's "display" name.

const CNcbiArguments & GetArguments(void) const

Get the application's cached unprocessed command-line arguments.

virtual list< CArgDescriptions * > GetAllDescriptions(void)

CArgAllow_Strings & AllowValue(const string &value)

Add allowed string values.

unsigned int TCommandArgFlags

Bitwise OR of ECommandArgFlags.

void AddFlag(const string &name, const string &comment, CBoolEnum< EFlagValue > set_value=eFlagHasValueIfSet, TFlags flags=0)

Add description for flag argument.

TArgs::const_iterator TArgsCI

Type for const iterator.

CArgDependencyGroup & Add(const string &arg_name, EInstantSet instant_set=eNoInstantSet)

Make a regular argument a member of this dependency group.

TArgGroups m_ArgGroups

Argument groups.

string x_IdentifyCommand(const string &command) const

virtual CArgValue * ProcessDefault(void) const =0

Process argument default.

CArgAllow_Int8s & AllowRange(Int8 from, Int8 to)

Add allow values.

virtual string & PrintUsage(string &str, bool detailed=false) const

Print usage message to end of specified string.

void Reset(void)

Remove all arguments.

CArgs * CreateArgs(TSize argc, TArray argv) const

Create parsed arguments in CArgs object.

CArgDescriptions(bool auto_help=true, CArgErrorHandler *err_handler=0)

Constructor.

CArgDescriptions::TFlags GetFlags(void) const

Get argument flags.

virtual CArgAllow * Clone(void) const

Create object's clone, moving it from stack memory into heap.

const CArgValue & operator[](const string &name) const

Get value of argument by name.

void x_CheckAutoHelp(const string &arg) const

Helper method for checking if auto help requested and throw CArgHelpException if help requested.

CArgAllow_Doubles & Allow(double value)

map< string, EInstantSet > m_Arguments

TArgsI x_Find(const string &name, bool *negative=NULL)

Helper method to find named parameter.

virtual string GetUsage(void) const

Get usage information.

virtual void PrintUsageXml(CNcbiOstream &out) const

Print constraints in XML format.

string m_Name

Argument name.

void AddExtra(unsigned n_mandatory, unsigned n_optional, const string &comment, EType type, TFlags flags=0)

Add description for the extra, unnamed positional arguments.

virtual const string & AsString(void) const =0

Get the argument's string value.

string & Print(string &str) const

Print (append) all arguments to the string "str" and return "str".

list< const CArgDesc * > m_args

virtual const char * GetErrCodeString(void) const override

Translate from the error code value to its string representation.

void x_PrintAliasesAsXml(CNcbiOstream &out, const string &name, bool negated=false) const

void AddDependencyGroup(CArgDependencyGroup *dep_group)

Add a dependency group.

string m_Command

current command

map< CConstRef< CArgDependencyGroup >, EInstantSet > m_Groups

virtual void SetConstraint(const CArgAllow *constraint, CArgDescriptions::EConstraintNegate negate=CArgDescriptions::eConstraint)

Set argument constraint.

virtual CArgAllow * Clone(void) const

Create object's clone, moving it from stack memory into heap.

TArgs m_Args

Assoc.map of arguments' name/descr.

string m_Name

Argument name.

virtual bool Verify(const string &value) const

Verify if specified value is allowed.

CRef< CArgErrorHandler > m_ErrorHandler

Global error handler or NULL.

size_t x_GetGroupIndex(const string &group) const

Get group index.

virtual CArgAllow * Clone(void) const

Create object's clone, moving it from stack memory into heap.

const string & GetName(void) const

Get argument name.

virtual ~CArgDescriptions(void)

Destructor.

virtual string GetUsageSynopsis(bool name_only=false) const =0

Get usage synopsis.

CArgDependencyGroup & SetMaxMembers(size_t max_members)

TPosArgs m_OpeningArgs

Opening args, ordered by position in cmd.-line.

virtual CArgAllow * Clone(void) const

Create object's clone, moving it from stack memory into heap.

void AddNegatedFlagAlias(const string &alias, const string &arg_name, const string &comment=kEmptyStr)

Add negated alias for a flag argument.

void SetConstraint(const string &name, const CArgAllow *constraint, EConstraintNegate negate=eConstraint)

Set additional user defined constraint on argument value.

void AddDetails(list< string > &arr) const

CArgValue(const string &name)

Protected constructor and destructor.

virtual CArgAllow * Clone(void) const

Create object's clone, moving it from stack memory into heap.

TArgsCI x_Find(const string &name) const

Find argument value with name "name".

void SetDependency(const string &arg1, EDependency dep, const string &arg2)

Define a dependency.

CArgDescriptions * ShowAllArguments(bool show_all)

Include hidden arguments into USAGE.

void PrintArguments(const CArgDescriptions &desc) const

virtual void PrintUsageXml(CNcbiOstream &out) const

Print argument description in XML format.

bool Exist(const string &name) const

Check existence of argument description.

CArgAllow_Symbols & Allow(ESymbolClass symbol_class)

Add allowed symbols.

void SetMiscFlags(TMiscFlags flags)

Set the selected flags.

void AddDefaultPositional(const string &name, const string &comment, EType type, const string &default_value, TFlags flags=0, const string &env_var=kEmptyStr, const char *display_value=nullptr)

Add description for optional positional argument with default value.

SIZE_TYPE m_UsageWidth

Maximum length of a usage line.

void PrintUsage(list< string > &arr, size_t offset) const

void AddKey(const string &name, const string &synopsis, const string &comment, EType type, TFlags flags=0)

Add description for mandatory key.

TStrings m_Strings

Set of allowed string values.

list< string > m_CmdGroups

group names, and order

virtual const CArgErrorHandler * GetErrorHandler(void) const

Get error handler for the argument.

virtual void AddStdArguments(THideStdArgs mask)

Add standard arguments.

string m_Comment

Argument description.

TDependencies::const_iterator TDependency_CI

void SetUsageContext(const string &usage_name, const string &usage_description, bool usage_sort_args=false, SIZE_TYPE usage_width=78)

Set extra info to be used by PrintUsage().

void AddAlias(const string &alias, const string &arg_name)

Add argument alias.

void PrintUsageIfNoArgs(bool do_print=true)

Print usage and exit.

virtual void SetErrorHandler(CArgErrorHandler *)

Set error handler for the argument.

virtual bool IsConstraintInverted() const

Returns TRUE if associated constraint is inverted (NOT)

unsigned int TFileFlags

Bitwise OR of "EFileFlags".

virtual void PrintUsageXml(CNcbiOstream &out) const

Print constraints in XML format.

virtual const CArgAllow * GetConstraint(void) const

Get argument constraint.

virtual const char * GetErrCodeString(void) const override

Translate from the error code value to its string representation.

CArgs & Assign(const CArgs &other)

Copy contents of another object into this one.

void x_PreCheck(void) const

Helper method for doing pre-processing consistency checks.

void Delete(const string &name)

Delete description of argument with name "name".

virtual string GetUsage(void) const

Get usage information.

EArgSetType GetArgsType() const

void AddPositional(const string &name, const string &comment, EType type, TFlags flags=0)

Add description for mandatory positional argument.

virtual string GetUsage(void) const =0

Get usage information.

static const char * GetTypeName(EType type)

Get argument type's name.

CArgs & operator=(const CArgs &other)

Creating copy of this object usually makes no sense if it is really required, please use Assign metho...

CArgDependencyGroup(void)

EArgPositionalMode GetPositionalMode() const

void x_PrintComment(list< string > &arr, const CArgDesc &arg, SIZE_TYPE width) const

CArgs * SetCommand(const string &command)

Set current command.

virtual void PrintUsageXml(CNcbiOstream &out) const

Print constraints in XML format.

TArgs::iterator TArgsI

Type for iterator.

bool x_CreateArg(const string &arg1, bool have_arg2, const string &arg2, unsigned *n_plain, CArgs &args) const

Process arguments.

void ResetMiscFlags(TMiscFlags flags)

Clear the selected usage flags.

virtual string GetUsageCommentAttr(void) const =0

Get usage comment attribute.

string m_UsageName

Program name.

EArgSetType m_ArgsType

Type of arguments.

const string & GetName(void) const

Get argument name.

virtual void PrintUsageXml(CNcbiOstream &out) const

Print constraints in XML format.

void AddOptionalKey(const string &name, const string &synopsis, const string &comment, EType type, TFlags flags=0)

Add description for optional key without default value.

void AddCommand(const string &cmd, CArgDescriptions *description, const string &alias=kEmptyStr, ECommandFlags flags=eDefault)

Add command argument descriptions.

void AddOptionalPositional(const string &name, const string &comment, EType type, TFlags flags=0)

Add description for optional positional argument without default value.

virtual void PrintUsageXml(CNcbiOstream &out) const

Print constraints in XML format.

friend class CCommandArgDescriptions

void SetOrdinalPosition(size_t pos)

virtual string GetUsage(void) const

Get usage information.

void SetArgsType(EArgSetType args_type)

Set type of argument description (cmdline vs CGI).

CArgAllow_Strings(NStr::ECase use_case=NStr::eCase)

Constructor.

virtual CArgAllow * Clone(void) const

Create object's clone, moving it from stack memory into heap.

set< TSymClass > m_SymClass

CArgDescriptions::TFlags m_Flags

void AddSynopsis(list< string > &arr, const string &intro, const string &prefix) const

void SetDetailedDescription(const string &usage_description)

Set detailed usage description.

size_t m_CurrentCmdGroup

current group #

virtual bool Verify(const string &value) const

Verify if specified value is allowed.

set< CConstRef< CArgDependencyGroup > > m_DependencyGroups

size_t x_GetCommandGroupIndex(const string &group) const

virtual string GetUsage(void) const

Get usage information.

virtual void SetGroup(size_t)

Set argument group.

virtual void PrintUsageXml(CNcbiOstream &out) const

Print constraints in XML format.

virtual void AddStdArguments(THideStdArgs mask)

Add standard arguments.

virtual bool Verify(const string &value) const =0

Verify if specified value is allowed.

list< string > m_Commands

command names, and order

bool x_Evaluate(const CArgs &args, string *arg_set, string *arg_unset) const

virtual bool Verify(const string &value) const

Verify if specified value is allowed.

TArgs::iterator TArgsI

Arguments iterator.

EArgSetType

Type of CArgDescriptions For a CGI application positional arguments and flags does not make sense (th...

bool m_HasHidden

Has hidden arguments.

virtual CArgs * CreateArgs(const CNcbiArguments &argv) const

Parse command-line arguments 'argv'.

void x_SetDefault(const string &def_value, bool from_def)

void Add(CArgValue *arg, bool update=false, bool add_value=false)

Add new argument name and value.

virtual string & PrintUsage(string &str, bool detailed=false) const

Print usage message to end of specified string.

void Remove(const string &name)

Remove argument of name "name".

virtual ~CArgDependencyGroup(void)

TDependencies m_Dependencies

Arguments' dependencies.

map< string, string > m_Aliases

command to alias; one alias only

void AddOpening(const string &name, const string &comment, EType type, TFlags flags=0)

Add description of mandatory opening positional argument.

CArgAllow_Doubles & AllowRange(double from, double to)

Add allowed values.

unsigned int TFlags

Bitwise OR of "EFlags".

bool IsEmpty(void) const

Check if there are no arguments in this container.

vector< CRef< CArgValue > > GetAll(void) const

Get all available arguments.

virtual CArgAllow * Clone(void) const

Create object's clone, moving it from stack memory into heap.

TArgs m_Args

Assoc. map of arguments' name/value.

void AddDescription(list< string > &arr, bool detailed) const

size_t m_nExtra

Cached # of unnamed positional arguments.

set< TInterval > m_MinMax

void SetErrorHandler(const string &name, CArgErrorHandler *err_handler)

Set individual error handler for the argument.

list< string > TKeyFlagArgs

List of flag arguments.

CArgAllow_Strings * Allow(const string &value)

Add allowed string values.

virtual CArgValue * ProcessArgument(const string &value) const =0

Process argument with specified value.

EDependency

Dependencies between arguments.

virtual bool Verify(const string &value) const

Verify if specified value is allowed.

void x_AddDesc(CArgDesc &arg)

Helper method for adding description.

virtual size_t GetGroup(void) const

Get argument group.

EInstantSet

Control whether the "setting" of this particular member marks the whole group as "set" regardless of ...

virtual void VerifyDefault(void) const

Verify argument default value.

void SetCurrentGroup(const string &group)

Set current arguments group name.

virtual CArgValue * HandleError(const CArgDesc &arg_desc, const string &value) const

Process invalid argument value.

size_t m_CurrentGroup

Currently selected group (0 = no group)

string m_DetailedDescription

Program long description.

virtual string GetUsage(void) const

Get usage information.

EType

Available argument types.

void PrintUsageXml(CNcbiOstream &out) const

bool x_IsCommandMandatory(void) const

string m_UsageDescription

Program description.

TDescriptions m_Description

command to ArgDescriptions

const string & GetComment(void) const

Get argument description.

CPrintUsage(const CArgDescriptions &desc)

virtual string GetUsage(void) const

Get usage information.

virtual ~CCommandArgDescriptions(void)

Destructor.

CArgDependencyGroup & SetMinMembers(size_t min_members)

string m_NoSeparator

Arguments allowed to use no separator.

virtual TStringArray & SetStringList()

Get reference on value list for further modification.

virtual ~CArgDesc(void)

Destructor.

int THideStdArgs

Binary OR of "EHideStdArgs".

virtual bool Verify(const string &value) const

Verify if specified value is allowed.

unsigned int TArgValueFlags

Bitwise OR of "EArgValueFlags".

CPrintUsageXml(const CArgDescriptions &desc, CNcbiOstream &out)

bool Exist(const string &name) const

Check if there is already an argument description with specified name.

bool m_AutoHelp

Special flag "-h" activated.

TArgs::const_iterator TArgsCI

Const arguments iterator.

vector< string > TStringArray

Some values types can contain several value lists.

const string & GetDefault(TArgValueFlags *flags=NULL) const

Get default value of the argument.

static CRef< CArgDependencyGroup > Create(const string &name, const string &description=kEmptyStr)

Create new dependency group.

set< TInterval > m_MinMax

vector< string > TPosArgs

Positional arg. vector.

void Evaluate(const CArgs &args) const

ESymbolClass

Symbol class for defining sets of characters.

EArgPositionalMode m_PositionalMode

Processing of positional args.

CArgDesc(const string &name, const string &comment, CArgDescriptions::TFlags flags=0)

Constructor.

string GetUsageConstraint(void) const

Get usage constraint.

virtual void PrintUsageXml(CNcbiOstream &out) const

Print argument description in XML format.

void AddCommandDescription(list< string > &arr, const string &cmd, const map< string, string > *aliases, size_t max_cmd_len, bool detailed) const

unsigned m_nExtraOpt

> # of mandatory extra args

virtual const TStringArray & GetStringList() const

Get the value list.

TKeyFlagArgs m_KeyFlagArgs

Key/flag args, in order of insertion.

EConstraintNegate

Flag to invert constraint logically.

map< string, size_t > m_Groups

command to group #

TPosArgs m_PosArgs

Pos. args, ordered by position in cmd.-line.

bool x_IsMultiArg(const string &name) const

Returns TRUE if parameter supports multiple arguments.

void AddDefaultKey(const string &name, const string &synopsis, const string &comment, EType type, const string &default_value, TFlags flags=0, const string &env_var=kEmptyStr, const char *display_value=nullptr)

Add description for optional key with default value.

void AddDefaultFileArguments(const string &default_config)

Add logfile and conffile arguments.

static bool VerifyName(const string &name, bool extended=false)

Verify if argument "name" is spelled correctly.

CArgAllow_Int8s & Allow(Int8 value)

virtual list< CArgDescriptions * > GetAllDescriptions(void)

TCommandArgFlags m_Cmd_req

string PrintXml(CNcbiOstream &out) const

Print description in XML format.

void SetCurrentCommandGroup(const string &group)

Set current command group name.

void x_PostCheck(CArgs &args, unsigned int n_plain, EPostCheckCaller caller) const

Helper method for doing post-processing consistency checks.

bool IsSetMiscFlag(EMiscFlags flag) const

Check if the flag is set.

@ fOptionalSeparator

Allow to ignore separator between the argument's name and value.

@ fMandatorySeparator

Require '=' separator.

@ fStandard

Mark standard/special flag. For internal use only.

@ fFileFlags

Mask for all file-related flags.

@ fAppend

Append to end-of-file; for eOutputFile or eIOFile.

@ fCreatePath

If needed, create directory where the file is located.

@ fAllowMultiple

Repeated key arguments are legal (use with AddKey)

@ fWarnOnInvalidValue

Post warning when an invalid value is ignored (no effect if fIgnoreInvalidValue is not set).

@ fBinary

Open as binary file; for eInputFile, eOutputFile, eIOFile.

@ fNoCreate

If the file does not exist, do not create it; for eOutputFile or eIOFile.

@ fTruncate

Delete contents of an existing file; for eOutputFile or eIOFile.

@ fOptionalSeparatorAllowConflict

For arguments with fOptionalSeparator flag, allow other arguments which names begin with the same cha...

@ fConfidential

Confidential argument Such arguments can be read from command line, from file, or from console.

@ fIgnoreInvalidValue

Ignore invalid argument values.

@ fPreOpen

Open file right away; for eInputFile, eOutputFile, eIOFile.

@ fHidden

Hide it in Usage.

@ eConvertKeys

called by ConvertKeys()

@ eHidden

Hide command in Usage.

@ eHelpShowAll

Error code for detailed help message which includes hidden arguments.

@ eHelpErr

Show short help message and return error.

@ eHelp

Error code for short help message.

@ eHelpXml

Error code for XML formatted help message.

@ eHelpFull

Error code for detailed help message.

@ fUsageIfNoArgs

Force printing USAGE (and then exit) if no command line args are present.

@ fUsageSortArgs

Sort args when printing USAGE.

@ eExcludedValue

The value is excluded by another argument.

@ eNoFile

Expecting a file.

@ eNoValue

Expecting an argument value.

@ eWrongCast

Incorrect cast for an argument.

@ eSynopsis

Synopsis error.

@ eArgType

Wrong argument type.

@ eConvert

Conversion problem.

@ eConstraint

Argument value outside constraints.

@ eInvalidArg

Invalid argument.

@ fArgValue_HasDefault

Has default value.

@ fArgValue_FromDefault

Not provided in command line.

@ eCgiArgs

CGI application.

@ eRegularArgs

Regular application.

@ eRequires

One argument requires another.

@ eExcludes

One argument excludes another.

@ eNoSortCommands

On PrintUsage, keep commands unsorted.

@ eNoSortGroups

On PrintUsage, keep command groups unsorted.

@ eCommandOptional

Command is not necessary.

@ eDateTime

DateTime string, formats: "M/D/Y h:m:s", "Y-M-DTh:m:g", "Y/M/D h:m:g", "Y-M-D h:m:g".

@ eInt8

Convertible into an integer number (Int8 only)

@ k_EType_Size

For internal use only.

@ eInputFile

Name of file (must exist and be readable)

@ eBoolean

{'true', 't', 'false', 'f'}, case-insensitive

@ eDouble

Convertible into a floating point number (double)

@ eDataSize

Integer number with possible "software" qualifiers (KB, KiB, et al)

@ eIntId

Convertible to TIntId (int or Int8 depending on NCBI_INT8_GI)

@ eString

An arbitrary string.

@ eIOFile

Name of file (must be writable)

@ eOutputFile

Name of file (must be writable)

@ eInteger

Convertible into an integer number (int or Int8)

@ eDirectory

Name of file directory.

@ fHideFullVersion

Hide full version description.

@ fHideConffile

Hide configuration file description.

@ fHideHelp

Hide help description.

@ fHideXmlHelp

Hide XML help description.

@ fHideLogfile

Hide log file description.

@ fHideVersion

Hide version description.

@ fHideFullHelp

Hide full help description.

@ fHideDryRun

Hide dryrun description.

@ ePositionalMode_Loose

Loose mode.

@ eLower

Lowercase characters.

@ eAlnum

Alphanumeric characters.

@ eGraph

Graphical characters.

@ ePrint

Printable characters.

@ eSpace

Space characters.

@ eUser

User defined characters using constructor with string&.

@ eDigit

Digit characters.

@ eUpper

Uppercase characters.

@ eXdigit

Hexadecimal characters.

@ eCntrl

Control characters.

@ ePunct

Punctuation characters.

@ eAlpha

Alphabet characters.

@ eConstraintInvert

Logical NOT.

@ eConstraint

Constraint is not inverted (taken as is)

@ fTruncate

Open file in truncate mode.

@ fAppend

Open file in append mode.

@ fBinary

Open file in binary mode.

#define ERR_POST_X(err_subcode, message)

Error posting with default error code and given error subcode.

void Shift(int n=1)

Delete arguments from 1 to n.

const string & Get(const string &name, bool *found=NULL) const

Get environment value by name.

SIZE_TYPE Size(void) const

Get size (number) of arguments.

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Warning(CExceptionArgs_Base &args)

TErrCode GetErrCode(void) const

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

#define NCBI_RETHROW(prev_exception, exception_class, err_code, message)

Generic macro to re-throw an exception.

string GetDir(EIfEmptyPath mode=eIfEmptyPath_Current) const

Get the directory component for this directory entry.

virtual bool Exists(void) const

Check the entry existence.

bool CreatePath(TCreateFlags flags=fCreate_Default) const

Create the directory path recursively possibly more than one at a time.

void Reset(void)

Reset reference object.

TObjectType * Release(void)

Release a reference to the object and return a pointer to the object.

TObjectType * GetPointerOrNull(void) THROWS_NONE

Get pointer value.

int64_t Int8

8-byte (64-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::iostream CNcbiIostream

Portable alias for iostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

IO_PREFIX::ifstream CNcbiIfstream

Portable alias for ifstream.

IO_PREFIX::fstream CNcbiFstream

Portable alias for fstream.

static bool StringToBool(const CTempString str)

Convert string to bool.

NCBI_NS_STD::string::size_type SIZE_TYPE

static string SizetToString(size_t value, TNumToStringFlags flags=0, int base=10)

Convert size_t to string.

static string Int8ToString(Int8 value, TNumToStringFlags flags=0, int base=10)

Convert Int8 to string.

static string PrintableString(const CTempString str, TPrintableMode mode=fNewLine_Quote|fNonAscii_Passthru)

Get a printable version of the specified string.

static string DoubleToString(double value, int precision=-1, TNumToStringFlags flags=0)

Convert double to string.

static Int8 StringToInt8(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to Int8.

static double StringToDouble(const CTempStringEx str, TStringToNumFlags flags=0)

Convert string to double.

static Uint8 StringToUInt8_DataSize(const CTempString str, TStringToNumFlags flags=0)

Convert string that can contain "software" qualifiers to Uint8.

static const string BoolToString(bool value)

Convert bool to string.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static int strcasecmp(const char *s1, const char *s2)

Case-insensitive comparison of two zero-terminated strings.

static CStringUTF8 AsUTF8(const CTempString &src, EEncoding encoding, EValidate validate=eNoValidate)

Convert into UTF8 from a C/C++ string.

static list< string > & WrapList(const list< string > &l, SIZE_TYPE width, const string &delim, list< string > &arr, TWrapFlags flags=0, const string *prefix=0, const string *prefix1=0)

Wrap the list using the specified criteria.

static string XmlEncode(const CTempString str, TXmlEncode flags=eXmlEnc_Contents)

Encode a string for XML.

static string UIntToString(unsigned int value, TNumToStringFlags flags=0, int base=10)

Convert UInt to string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static void TrimSuffixInPlace(string &str, const CTempString suffix, ECase use_case=eCase)

Trim suffix from a string (in-place)

static unsigned int StringToUInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to unsigned int.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

ECase

Which type of string comparison.

static void Wrap(const string &str, SIZE_TYPE width, IWrapDest &dest, TWrapFlags flags, const string *prefix, const string *prefix1)

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

static string UInt8ToString(Uint8 value, TNumToStringFlags flags=0, int base=10)

Convert UInt8 to string.

@ fDecimalPosixOrLocal

StringToDouble*(): For decimal point, try both C and current locale.

@ fWrap_Hyphenate

Add a hyphen when breaking words?

@ eNocase

Case insensitive compare.

@ eGmt

GMT (Greenwich Mean Time)

@ fMatch_Weak

Combination of both modes above.

@ fFormat_Simple

Use single characters as format symbols.

#define INVALID_HANDLE_VALUE

A value for an invalid file handle.

#define HANDLE

An abstraction for a file handle.

unsigned int

A callback function used to compare two keys in a database.

Definition of all error codes used in corelib (xncbi.lib).

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig

constexpr bool empty(list< Ts... >) noexcept

const GenericPointer< typename T::ValueType > T2 value

int strcmp(const char *str1, const char *str2)

Defines MS Windows specifics for our "C++" code.

#define THROW_CArg_ExcludedValue

void s_WriteXmlLine(CNcbiOstream &out, const string &tag, const string &data)

const char * s_ArgFullVersionXml

const char * s_ArgFullVersionJson

const char * s_ArgFullVersion

static string s_CArgs_ReadFromFile(const string &name, const string &filename)

static string s_CArgs_ReadFromStdin(const string &name, EEchoInput echo_input, const char *cue)

static const char * s_AutoHelp

static const char * s_AutoHelpXml

bool s_IsArgNameChar(char c)

static const char * s_AutoHelpShowAll

static string s_GetSymbolClass(CArgAllow_Symbols::ESymbolClass symbol_class)

string s_KeyUsageSynopsis(const string &name, const string &synopsis, bool name_only, CArgDescriptions::TFlags flags)

static void s_PrintCommentBody(list< string > &arr, const string &s, SIZE_TYPE width)

const char * s_ArgLogFile

bool s_IsPositional(const CArgDesc &arg)

const char * s_ArgCfgFile

static const char * s_ExtraName

Int8 s_StringToInt8(const string &value)

bool s_IsAllowedSymbol(unsigned char ch, CArgAllow_Symbols::ESymbolClass symbol_class, const string &symbol_set)

bool s_IsOptional(const CArgDesc &arg)

bool s_IsAlias(const CArgDesc &arg)

#define THROW_CArg_NoValue

bool s_IsKey(const CArgDesc &arg)

static string s_ComposeNameExtra(size_t idx)

string s_ArgExptMsg(const string &name, const string &what, const string &attr)

bool operator<(const AutoPtr< CArgDesc > &x, const AutoPtr< CArgDesc > &y)

void s_WriteEscapedStr(CNcbiOstream &out, const char *s)

static const char * s_AutoHelpFull

static string s_CArgs_ReadFromConsole(const string &name, EEchoInput echo_input, const char *cue)

bool s_IsFlag(const CArgDesc &arg)

static string s_GetUsageSymbol(CArgAllow_Symbols::ESymbolClass symbol_class, const string &symbol_set)

#define CHECK_STANDARD_ARG(func)

const char * s_ArgVersion

bool s_IsOpening(const CArgDesc &arg)

const char * s_ArgDelimiter

Defines command line argument related classes.

Defines unified interface to application:

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

bool eq(T x_, T y_, T round_)

std::istream & in(std::istream &in_, double &x_)

void copy(Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

int g(Seg_Gsm *spe, Seq_Mtf *psm, Thd_Gsm *tdg)

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