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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/ncbi__util_8c_source.html below:

NCBI C++ ToolKit: src/connect/ncbi_util.c Source File

*

(

* name)

*

= getenv(name);

((

, old_lk, lk));

(old_lk && old_lk != lk)

(old_lg && old_lg !=

)

(

* logfile,

FILE*

= fopen(logfile,

);

(

, logfile));

(

* logfile)

c = (

char)(*

++);

(c ==

|| c ==

|| c ==

||

c ==

|| c ==

|| c ==

||

c ==

|| c ==

|| c ==

|| c ==

) {

}

(c ==

|| !isascii(c) || !

(c))

,

width)

(w = dst, s = src;

; --

, ++s) {

c = (

char)(*s);

(width && width <= (

)(dst - w)) {

|| (

> 1 && s[ 1] ==

)

|| (s > src && s[-1] ==

)) {

(!isascii(c) || !

(c)) {

&& (

== 1

|| s[1] <

||

< s[1])

*dst++ = (char)(

+ v);

*dst++ = (char)(

+ v);

*dst++ = (char)(

+ v);

(width && w != dst)

rv = FormatMessage(FORMAT_MESSAGE_ALLOCATE_BUFFER |

FORMAT_MESSAGE_FROM_SYSTEM |

FORMAT_MESSAGE_MAX_WIDTH_MASK |

FORMAT_MESSAGE_IGNORE_INSERTS,

MAKELANGID(LANG_NEUTRAL, SUBLANG_DEFAULT),

LocalFree((HLOCAL)

);

* message,

(!

&& (!descr || !*descr)) {

(

> 0 && !descr) {

(!descr || !*descr ||

(descr,

, 8) == 0) {

(descr && *descr) {

dlen = strlen(descr);

(dlen &&

((

) descr[dlen - 1]))

(dlen > 1 && descr[dlen - 1] ==

)

mlen = message ? strlen(message) : 0;

(!(

= (

*)(*dynamic && message

? realloc((

*) message, mlen + dlen + 40)

:

( mlen + dlen + 40)))) {

(*dynamic && message)

((

*) message);

(release < 0)

memcpy(

, message, mlen);

memcpy(

+ mlen,

, 7);

mlen += (size_t) sprintf(

+ mlen,

< 0x10000 ?

:

,

, &

[!*descr]);

memcpy((

*) memcpy(

+ mlen, descr, dlen) + dlen,

, 2);

(release < 0)

kRawData_Beg[] =

;

kRawData_End[] =

;

datetime_len = 0;

level_len = 0;

module_len = 0;

function_len = 0;

file_line_len = 0;

*

, *s, datetime[40];

timefmt[] =

;

time_t now = time(0);

localtime_r(&now, &tm);

tm = *localtime(&now);

datetime_len = strftime(datetime,

(datetime), timefmt, &tm);

level_len = strlen(level) + 2;

module_len = strlen(mess->

) + 3;

*

= mess->

;

(

(

,

, 2) != 0 || *(

+= 2))

function_len = strlen(

) + (module_len ? 2 : 5);

file_line_len = 12 + strlen(mess->

) + 11;

data_len +=

(kRawData_Beg) + 20 +

(kRawData_End);

total_len = (datetime_len + file_line_len + module_len + function_len

(!(

= (

*)

(total_len + 1))) {

memcpy(s, datetime, datetime_len);

s += sprintf(s,

, mess->

, mess->

);

(module_len | function_len)

memcpy(s, mess->

, module_len -= 3);

memcpy(s, mess->

, function_len -= (module_len ? 2 : 5));

(module_len | function_len) {

memcpy(s, level, level_len -= 2);

s += sprintf(s, kRawData_Beg,

mess->

?

:

);

memcpy(s, kRawData_End,

(kRawData_End));

FILE*

= logdata->

;

= strlen(

);

fclose(logdata->

);

fflush(logdata->

);

(

&& auto_close)

(old_rg && old_rg != rg)

Nlm_PlatformName();

=

(

);

=

(

);

=

(

);

=

(

);

=

&& *

?

(

) : 0;

= strlen(

);

(

*) memcpy(

,

,

);

temp [NCBI_GETUSERNAME_BUFSIZE +

(*pwd)];

temp [NCBI_GETUSERNAME_BUFSIZE + 2];

=

(temp)/

(temp[0]) - 1;

(GetUserName(temp, &

)) {

(

<

(temp)/

(temp[0]) - 1);

((

= getlogin()) != 0)

(getlogin_r(temp,

(temp) - 1) == 0) {

temp[

(temp) - 1] =

;

((pwd = getpwuid(uid)) != 0) {

pwd = getpwuid_r(uid, (

passwd*) temp, temp +

(*pwd),

(temp) -

(*pwd));

(getpwuid_r(uid, (

passwd*) temp, temp +

(*pwd),

(temp) -

(*pwd), &pwd) != 0) {

(pwd && pwd->pw_name)

rv && *rv ? rv : 0;

s_PS = 0;

GetSystemInfo(&

);

s_PS = (size_t)

.dwPageSize;

x = sysconf(NCBI_SC_PAGESIZE);

((x = getpagesize()) <= 0)

ts.tv_sec = (time_t)(

/ 1000);

ts.tv_nsec = (long) ((

% 1000) * 1000000);

(void) nanosleep(&ts, 0);

(void)

(0, 0, (

)

);

tv.tv_sec = (long) (

/ 1000);

tv.tv_usec = (long)((

% 1000) * 1000);

(void) select(0, 0, 0, 0, &tv);

0x00000000, 0x04C11DB7, 0x09823B6E, 0x0D4326D9,

0x130476DC, 0x17C56B6B, 0x1A864DB2, 0x1E475005,

0x2608EDB8, 0x22C9F00F, 0x2F8AD6D6, 0x2B4BCB61,

0x350C9B64, 0x31CD86D3, 0x3C8EA00A, 0x384FBDBD,

0x4C11DB70, 0x48D0C6C7, 0x4593E01E, 0x4152FDA9,

0x5F15ADAC, 0x5BD4B01B, 0x569796C2, 0x52568B75,

0x6A1936C8, 0x6ED82B7F, 0x639B0DA6, 0x675A1011,

0x791D4014, 0x7DDC5DA3, 0x709F7B7A, 0x745E66CD,

0x9823B6E0, 0x9CE2AB57, 0x91A18D8E, 0x95609039,

0x8B27C03C, 0x8FE6DD8B, 0x82A5FB52, 0x8664E6E5,

0xBE2B5B58, 0xBAEA46EF, 0xB7A96036, 0xB3687D81,

0xAD2F2D84, 0xA9EE3033, 0xA4AD16EA, 0xA06C0B5D,

0xD4326D90, 0xD0F37027, 0xDDB056FE, 0xD9714B49,

0xC7361B4C, 0xC3F706FB, 0xCEB42022, 0xCA753D95,

0xF23A8028, 0xF6FB9D9F, 0xFBB8BB46, 0xFF79A6F1,

0xE13EF6F4, 0xE5FFEB43, 0xE8BCCD9A, 0xEC7DD02D,

0x34867077, 0x30476DC0, 0x3D044B19, 0x39C556AE,

0x278206AB, 0x23431B1C, 0x2E003DC5, 0x2AC12072,

0x128E9DCF, 0x164F8078, 0x1B0CA6A1, 0x1FCDBB16,

0x018AEB13, 0x054BF6A4, 0x0808D07D, 0x0CC9CDCA,

0x7897AB07, 0x7C56B6B0, 0x71159069, 0x75D48DDE,

0x6B93DDDB, 0x6F52C06C, 0x6211E6B5, 0x66D0FB02,

0x5E9F46BF, 0x5A5E5B08, 0x571D7DD1, 0x53DC6066,

0x4D9B3063, 0x495A2DD4, 0x44190B0D, 0x40D816BA,

0xACA5C697, 0xA864DB20, 0xA527FDF9, 0xA1E6E04E,

0xBFA1B04B, 0xBB60ADFC, 0xB6238B25, 0xB2E29692,

0x8AAD2B2F, 0x8E6C3698, 0x832F1041, 0x87EE0DF6,

0x99A95DF3, 0x9D684044, 0x902B669D, 0x94EA7B2A,

0xE0B41DE7, 0xE4750050, 0xE9362689, 0xEDF73B3E,

0xF3B06B3B, 0xF771768C, 0xFA325055, 0xFEF34DE2,

0xC6BCF05F, 0xC27DEDE8, 0xCF3ECB31, 0xCBFFD686,

0xD5B88683, 0xD1799B34, 0xDC3ABDED, 0xD8FBA05A,

0x690CE0EE, 0x6DCDFD59, 0x608EDB80, 0x644FC637,

0x7A089632, 0x7EC98B85, 0x738AAD5C, 0x774BB0EB,

0x4F040D56, 0x4BC510E1, 0x46863638, 0x42472B8F,

0x5C007B8A, 0x58C1663D, 0x558240E4, 0x51435D53,

0x251D3B9E, 0x21DC2629, 0x2C9F00F0, 0x285E1D47,

0x36194D42, 0x32D850F5, 0x3F9B762C, 0x3B5A6B9B,

0x0315D626, 0x07D4CB91, 0x0A97ED48, 0x0E56F0FF,

0x1011A0FA, 0x14D0BD4D, 0x19939B94, 0x1D528623,

0xF12F560E, 0xF5EE4BB9, 0xF8AD6D60, 0xFC6C70D7,

0xE22B20D2, 0xE6EA3D65, 0xEBA91BBC, 0xEF68060B,

0xD727BBB6, 0xD3E6A601, 0xDEA580D8, 0xDA649D6F,

0xC423CD6A, 0xC0E2D0DD, 0xCDA1F604, 0xC960EBB3,

0xBD3E8D7E, 0xB9FF90C9, 0xB4BCB610, 0xB07DABA7,

0xAE3AFBA2, 0xAAFBE615, 0xA7B8C0CC, 0xA379DD7B,

0x9B3660C6, 0x9FF77D71, 0x92B45BA8, 0x9675461F,

0x8832161A, 0x8CF30BAD, 0x81B02D74, 0x857130C3,

0x5D8A9099, 0x594B8D2E, 0x5408ABF7, 0x50C9B640,

0x4E8EE645, 0x4A4FFBF2, 0x470CDD2B, 0x43CDC09C,

0x7B827D21, 0x7F436096, 0x7200464F, 0x76C15BF8,

0x68860BFD, 0x6C47164A, 0x61043093, 0x65C52D24,

0x119B4BE9, 0x155A565E, 0x18197087, 0x1CD86D30,

0x029F3D35, 0x065E2082, 0x0B1D065B, 0x0FDC1BEC,

0x3793A651, 0x3352BBE6, 0x3E119D3F, 0x3AD08088,

0x2497D08D, 0x2056CD3A, 0x2D15EBE3, 0x29D4F654,

0xC5A92679, 0xC1683BCE, 0xCC2B1D17, 0xC8EA00A0,

0xD6AD50A5, 0xD26C4D12, 0xDF2F6BCB, 0xDBEE767C,

0xE3A1CBC1, 0xE760D676, 0xEA23F0AF, 0xEEE2ED18,

0xF0A5BD1D, 0xF464A0AA, 0xF9278673, 0xFDE69BC4,

0x89B8FD09, 0x8D79E0BE, 0x803AC667, 0x84FBDBD0,

0x9ABC8BD5, 0x9E7D9662, 0x933EB0BB, 0x97FFAD0C,

0xAFB010B1, 0xAB710D06, 0xA6322BDF, 0xA2F33668,

0xBCB4666D, 0xB8757BDA, 0xB5365D03, 0xB1F740B4

s_CRC32_Init(

)

(

= 0;

< 256; ++

) {

byteCRC = (

)

<< 24;

(j = 0; j < 8; ++j) {

(byteCRC & 0x80000000U) {

*ptr,

)

*

= (

*) ptr;

(

= 0;

<

; ++

) {

k = ((checksum >> 24) ^ *

++) & 0xFF;

* ptr,

)

*

= (

*) ptr;

= checksum & 0xFFFF,

= checksum >> 16;

(

=

>> 2;

; --

) {

(

<< 16) |

;

*

;

(!(

= (

*)

(

->block_len +

->digest_len)))

(key_len >

->block_len) {

key_len =

->digest_len;

(

= 0;

< key_len; ++

)

[

] = 0x36 ^ ((

*)

)[

];

(;

<

->block_len; ++

)

(

= 0;

< key_len; ++

)

[

] = 0x5C ^ ((

*)

)[

];

(;

<

->block_len; ++

)

(; (p = *

++); ++

) {

(!c && p !=

)

c = (char)

((

) c);

(!(

= *

++))

(*

==

&&

[1] !=

) {

(!(

= *

++))

= (char)

((

)

);

= (char)

((

)

);

(

<= c && c <=

)

}

(*

!=

);

(!(p = *

++))

c = (char)

((

) c);

p = (char)

((

) p);

{

{

, 17},

{

, 13}

= hostname ? strlen(hostname) : 0;

(

&& hostname[

- 1] ==

)

(

= 0;

<

(kEndings) /

(kEndings[0]); ++

) {

(strlen(kEndings[

].end) == kEndings[

].

);

(

> kEndings[

].

) {

beg =

- kEndings[

].len;

(hostname[beg - 1] !=

kEndings[

].

) == 0) {

hostname[beg] =

;

argc == 2 && ((*argv[1] ==

|| *argv[1] ==

) &&

(

(argv[1] + 1,

) == 0 ||

time_t

= (time_t)(-1);

time_t now = time(0);

gmtime_r(&now, &tm);

(tm.tm_isdst == 0);

= MultiByteToWideChar(CP_UTF8, 0,

, -1,

, 0);

s = (

*) LocalAlloc(LMEM_FIXED,

*

(*s));

MultiByteToWideChar(CP_UTF8, 0,

, -1, s,

);

ncbi::TMaskedQueryRegions mask

static const char si[8][64]

std::ofstream out("events_result.xml")

main entry point for tests

static const char * str(char *buf, int n)

#define poll(fds, nfds, timeout)

MT_LOCK CORE_GetLOCK(void)

Get the lock handle that is to be used by the core internals.

#define UTIL_PRINTABLE_WIDTH

ELOG_Level

Log severity level.

char * UTIL_PrintableStringEx(const char *src, size_t size, char *dst, int flags, int width)

Create a printable representation of a block of data of the specified size (or, if size is 0,...

void CORE_SetREG(REG rg)

Set the registry (no registry if "rg" is passed zero) – to be used by the core internals.

ECORE_Username

Select which username is the most preferable to obtain from the system.

void * UTIL_GenerateHMAC(const SHASH_Descriptor *hash, const void *text, size_t text_len, const void *key, size_t key_len, void *digest)

Generate an RFC2401 digest (HMAC).

unsigned int UTIL_Adler32_Update(unsigned int checksum, const void *ptr, size_t len)

Calculate/Update Adler-32 checksum NB: Initial checksum is "1".

unsigned int TLOG_FormatFlags

bitwise OR of "ELOG_FormatFlag"

time_t UTIL_Timezone(void)

Return timezone offset (in seconds West of UTC) for the current time zone.

void UTIL_ReleaseBufferOnHeap(const void *ptr)

#define UTIL_TcharToUtf8OnHeap(x)

Conversion from Unicode to UTF8, and back.

TLOG_FormatFlags CORE_SetLOGFormatFlags(TLOG_FormatFlags flags)

int UTIL_MatchesMask(const char *text, const char *mask)

Shortcut for UTIL_MatchesMaskEx(text, mask, 1), that is matching is done case-insensitively for the l...

REG REG_Delete(REG rg)

Decrement internal reference count by 1, and if it reaches 0, then call "rg->cleanup(rg->data)",...

#define UTIL_TcharToUtf8(x)

int CORE_SetLOGFILE_NAME(const char *logfile)

Same as CORE_SetLOGFILE_NAME_Ex(logfile, CORE_LOGFILE_CUTOFF_LEVEL, eLOG_Fatal).

int UTIL_HelpRequested(int argc, char **argv)

Given the main()'s argc and argv return non-zero (true) if the arguments specify that only a help opt...

#define CORE_LOGFILE_CUTOFF_LEVEL

Default CORE LOG cut off log level.

void CORE_SetLOCK(MT_LOCK lk)

Set the MT critical section lock/unlock handler – to be used by the core internals for protection of ...

LOG CORE_GetLOG(void)

Get the log handle that is to be used by the core internals (CORE LOG).

int CORE_SetLOGFILE_NAME_Ex(const char *logfile, ELOG_Level cut_off, ELOG_Level fatal_err)

Same as CORE_SetLOGFILE_Ex(fopen(logfile, "a"), cut_off, fatal_err, TRUE).

void LOG_ToFILE(LOG lg, FILE *fp, int auto_close)

Same as LOG_ToFILEx(lg, fp, eLOG_Trace, eLOG_Fatal, auto_close).

size_t CORE_GetVMPageSize(void)

Obtain virtual memory page size.

void CORE_SetLOGFILE_Ex(FILE *fp, ELOG_Level cut_off, ELOG_Level fatal_err, int auto_close)

Standard logging (CORE LOG) to the specified file stream.

REG CORE_GetREG(void)

Get the registry that is to be used by the core internals.

const char * CORE_GetUsername(char *buf, size_t bufsize)

Equivalent to CORE_GetUsernameEx(buf, bufsize, eNCBI_UsernameLogin) except that it always returns non...

LOG LOG_Create(void *data, FLOG_Handler handler, FLOG_Cleanup cleanup, MT_LOCK lock)

Create a new LOG (with an internal reference count set to 1).

const char * CORE_GetAppName(void)

Obtain current application name (toolkit dependent).

MT_LOCK MT_LOCK_Delete(MT_LOCK lk)

Decrement internal reference count by 1, and if it reaches 0, then destroy the handle,...

const char * CORE_GetUsernameEx(char *buf, size_t bufsize, ECORE_Username username)

Obtain and store in the buffer provided, the best (as possible) user name that matches the requested ...

int UTIL_MatchesMaskEx(const char *text, const char *mask, int ignore_case)

Match a given text with a given pattern mask.

void CORE_Msdelay(unsigned long ms)

Delay execution of the current thread by the specified number of milliseconds.

size_t UTIL_PrintableStringSize(const char *data, size_t size)

Calculate size of buffer needed to store printable representation of the block of data of the specifi...

char * CORE_GetNcbiRequestID(ENcbiRequestID reqid)

Obtain current NCBI request ID (if known, per thread).

char * LOG_ComposeMessage(const SLOG_Message *mess, TLOG_FormatFlags flags)

Compose a message using the "call_data" info.

void CORE_SetLOG(LOG lg)

Set the log handle (no logging if "lg" is passed zero) – to be used by the core internals (CORE LOG).

void CORE_SetLOGFILE(FILE *fp, int auto_close)

Same as CORE_SetLOGFILE_Ex(fp, CORE_LOGFILE_CUTOFF_LEVEL, eLOG_Fatal, auto_close).

char * UTIL_NcbiLocalHostName(char *hostname)

Cut off well-known NCBI domain suffix out of the passed "hostname".

#define UTIL_Utf8ToTchar(x)

LOG LOG_Reset(LOG lg, void *data, FLOG_Handler handler, FLOG_Cleanup cleanup)

Reset the "lg" to use the new "data", "handler" and "cleanup".

#define UTIL_ReleaseBuffer(x)

const char * LOG_LevelStr(ELOG_Level level)

Obtain verbal representation of an enum level value.

const char * NcbiMessagePlusError(int *dynamic, const char *message, int error, const char *descr)

Add current "error" (and maybe its description) to the message: <message>[ {error=[[<error>][,...

unsigned int UTIL_CRC32_Update(unsigned int checksum, const void *ptr, size_t len)

Calculate/Update CRC-32 checksum NB: Initial checksum is "0".

#define UTIL_PRINTABLE_WIDTH_MIN

LOG LOG_Delete(LOG lg)

Decrement internal reference count by 1, and if it reaches 0, then call "lg->cleanup(lg->data)",...

const char * CORE_GetPlatform(void)

Return NCBI platrofm ID (if known).

void LOG_ToFILE_Ex(LOG lg, FILE *fp, ELOG_Level cut_off, ELOG_Level fatal_err, int auto_close)

LOG_Reset specialized to log to a "FILE*" stream using LOG_ComposeMessage.

ENcbiRequestID

NCBI request ID enumerator.

@ eCORE_UsernameLogin

login UID

@ eCORE_UsernameCurrent

process UID

@ eCORE_UsernameReal

real UID

@ fUTIL_PrintableNoNewLine

Do not include graphical newlines.

@ fUTIL_PrintableFullOctal

No contactions in octals \ooo.

@ fLOG_FullOctal

do not do reduction in octal data bytes

@ fLOG_Default

fLOG_Short if NDEBUG, else fLOG_Full

@ fLOG_None

nothing but spec'd parts, msg and data

@ fLOG_OmitNoteLevel

do not add "NOTE" if level is eLOG_Note

@ eNcbiRequestID_SID

NCBI Session ID.

@ eNcbiTraceState

OpenTelemetry tracestate header.

@ eNcbiRequestID_HitID

NCBI Hit ID.

@ eNcbiTraceParent

OpenTelemetry traceparent header.

unsigned int

A callback function used to compare two keys in a database.

static void text(MDB_val *v)

const struct ncbi::grid::netcache::search::fields::SIZE size

const struct ncbi::grid::netcache::search::fields::KEY key

int strncmp(const char *str1, const char *str2, size_t count)

int strcmp(const char *str1, const char *str2)

FNcbiGetRequestID g_CORE_GetRequestID

FNcbiGetAppName g_CORE_GetAppName

#define CORE_DEBUG_ARG(arg)

#define CORE_LOGF_ERRNO_X(subcode, level, error, fmt_args)

#define CORE_TRACEF(fmt_args)

static int x_MatchesMask(const char *text, const char *mask, int ignore_case)

static const unsigned int s_CRC32Table[256]

static const char * s_WinStrerror(DWORD error)

#define NCBI_DEFAULT_PAGE_SIZE

#define FINALIZE_ADLER(a)

static TLOG_FormatFlags s_LogFormatFlags

static void s_LOG_FileHandler(void *data, const SLOG_Message *mess)

static void s_LOG_FileCleanup(void *data)

static const char kOutOfMemory[]

static char * x_SaveStr(const char *str, char *buf, size_t bufsize)

static PCRE2_SIZE bufsize

static int message_len(const char *message, int offset)

static SLJIT_INLINE sljit_ins ms(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

static SLJIT_INLINE sljit_ins st(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

static SLJIT_INLINE sljit_ins lg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

Message and miscellaneous data to pass to log post callback FLOG_Handler.

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