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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/muscle__tool__job_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_alignment/muscle_tool_job.cpp Source File

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40 #include <wx/filename.h> 41 #include <wx/sstream.h> 42 #include <wx/txtstrm.h> 43 #include <wx/msgdlg.h> 60  if

(!wxFileName::FileExists(muscleExe)) {

68

wxStringOutputStream strstr;

69

wxTextOutputStream os(strstr);

71 #if defined(__WINDOWS__) 72

os <<

wxT

(

"\""

) << muscleExe <<

wxT

(

"\""

)

74

os <<

wxT

(

"'"

) << muscleExe <<

wxT

(

"'"

)

78

<<

wxT

(

" -maxmb 2048"

);

81

os <<

wxT

(

" -seqtype protein"

);

103

moreParams.Trim(

true

);

104

moreParams.Trim(

false

);

105  if

(!moreParams.empty())

106

os <<

wxT

(

" "

) << moreParams;

108 #if defined(__WINDOWS__) 109  return

strstr.GetString();

111  return "sh -c \""

+ strstr.GetString() +

"\""

;

User-defined methods of the data storage class.

User-defined methods of the data storage class.

static SQLCHAR output[256]

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

wxString GetCommandLine() const

CMuscleToolParams m_Params

int GetScoringMethod() const

CMuscleToolJob(const CMuscleToolParams &params)

CMuscleToolJob.

virtual wxString x_GetCommandLine(const wxString &input, const wxString &output, bool is_nucleotide)

Returns the command line, that will be used to execute the third-party tool.

wxString GetMuscleExecutable() const

bool GetGenerateTree() const

string m_Descr

mutex to sync our internals

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

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