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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/multisource__util_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/blast/seqdb_writer/multisource_util.cpp Source File

38 #ifndef SKIP_DOXYGEN_PROCESSING 44

vector<string> & lines)

53  while

(

f

&& (!

f

.eof())) {

69  int

bitnum = iter1->first;

70  const

vector<string> & v = iter1->second;

72  ITERATE

(vector<string>, iter2, v) {

76

id2links[

key

] |= bitnum;

86  bool

specific(

false

);

91  if

(seqid.

Empty

()) {

99  string

tempID =

"lcl|"

+ acc;

119  bool

digits = !! acc.size();

121  for

(

unsigned i

= 0;

i

< acc.size();

i

++) {

129

gi = NStr::StringToNumeric<TGi>(acc);

163

vector<string> & keys)

170

keys.push_back(

key

);

static const char * str(char *buf, int n)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

@ fLabel_GeneralDbIsContent

For type general, use the database name as the tag and the (text or numeric) key as the content.

@ eContent

Untagged human-readable accession or the like.

void Reset(void)

Reset reference object.

bool Empty(void) const THROWS_NONE

Check if CRef is empty – not pointing to any object, which means having a null value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

CNcbiIstream & NcbiGetlineEOL(CNcbiIstream &is, string &str, string::size_type *count=NULL)

Read from "is" to "str" the next line (taking into account platform specifics of End-of-Line)

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

list< CRef< CSeq_id > > TSeqid

bool IsSetVersion(void) const

Check if a value has been assigned to Version data member.

string AccessionToKey(const string &acc)

bool CheckAccession(const string &acc, TGi &gi, CRef< objects::CSeq_id > &seqid, bool &specific)

void GetDeflineKeys(const objects::CBlast_def_line &defline, vector< string > &keys)

Get all keys for a defline.

void ReadTextFile(CNcbiIstream &f, vector< string > &lines)

void MapToLMBits(const TLinkoutMap &gilist, TIdToBits &id2links)

Read a set of GI lists, each a vector of strings, and combine the bits into the resulting linkbits ma...

void GetSeqIdKey(const objects::CSeq_id &id, string &key)

const struct ncbi::grid::netcache::search::fields::KEY key

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