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NCBI C++ ToolKit: src/algo/ms/omssa/msmerge.hpp Source File

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FindMinMaxSearchSettingId(

& Min,

& Max)

;

FindMinMaxSpectrumNumber(

CheckLibraryNameAndSize(

Name,

Size)

;

RenumberSearchSettingId(

Min);

RenumberSpectrumNumber(

Min);

& GetOids(

)

;

& SetOids(

);

PopulateOidList(

);

FindMinMaxForOneSetting(

RenumberOneSearchSettingId(

User-defined methods of the data storage class.

@MSSearchSettings.hpp User-defined methods of the data storage class.

COMSSASearch(const COMSSASearch &value)

COMSSASearch & operator=(const COMSSASearch &value)

const TOid & GetOids(void) const

get the oid list

TOid Oids

list of oids in used in search

TOid & SetOids(void)

set the oid list

The NCBI C++ standard methods for dealing with std::string.

ESerialDataFormat

Data file format.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOMSSA_EXPORT

CObjectOStream * SetUpOutputFile(CObjectOStream *os, ESerialDataFormat DataFormat)

sets up output file based on DataFormat in particular, initializes xml stream appropriately

const GenericPointer< typename T::ValueType > T2 value

Defines NCBI C++ exception handling.

Int4 TOid

Ordinal ID in BLAST databases.

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