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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/mrna__cds_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/mrna_cds.cpp Source File

* ptr = it->object.GetPointer();

(!DoesMrnaExist(it->scope->GetSeq_featHandle(*seqfeat).GetAnnot().GetParentEntry()))

x_ChkAndMakeMRna(seqfeat, composite,scope);

(!DoesMrnaExist(fci->GetAnnot().GetParentEntry()))

x_ChkAndMakeMRna(fci->GetSeq_feat().GetPointer(), composite,scope);

(seq_entry) {

(!DoesMrnaExist(fci->GetAnnot().GetParentEntry()))

x_ChkAndMakeMRna(fci->GetSeq_feat().GetPointer(), composite,scope);

(!sel_srv)

;

sel_srv->GetActiveObjects(

);

apply_to(composite,

,scope);

CRef< CSeq_feat > MakemRNAforCDS(const CSeq_feat &cds, CScope &scope)

MakemRNAforCDS A function to create a CSeq_feat that represents the appropriate mRNA for a given CDS.

void AddCommand(IEditCommand &command)

bool DoesMrnaExist(CSeq_entry_Handle seh)

bool IsOrganelle(const CSeq_feat *cd, CScope &scope)

void x_ChkAndMakeMRna(SConstScopedObject &obj, CRef< CCmdComposite > composite)

bool apply(IWorkbench *wb, ICommandProccessor *cmdProcessor, const string &title, CScope &scope)

virtual void apply_to(const CSeq_entry_Handle &tse, CRef< CCmdComposite > composite)

namespace ncbi::objects::

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

IWorkbench is the central interface in the application framework.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

CIRef< T > GetServiceByType()

retrieves a typed reference to a service, the name of C++ type is used as the name of the service.

vector< SConstScopedObject > TConstScopedObjects

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TGenome GetGenome(void) const

Get the Genome member data.

bool IsSetGenome(void) const

Check if a value has been assigned to Genome data member.

bool IsCdregion(void) const

Check if variant Cdregion is selected.

const TLocation & GetLocation(void) const

Get the Location member data.

const TData & GetData(void) const

Get the Data member data.

bool IsSetLocation(void) const

feature made from Check if a value has been assigned to Location data member.

const TSource & GetSource(void) const

Get the variant data.

@ e_Molinfo

info on the molecule and techniques

@ e_Source

source of materials, includes Org-ref

void GetViewObjects(IWorkbench *workbench, TConstScopedObjects &objects)

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