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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/mod__to__enum_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/readers/mod_to_enum.cpp Source File

normalized = unnormalized;

irrelevant_prefix_suffix_chars =

;

pos = normalized.find_first_not_of(irrelevant_prefix_suffix_chars);

normalized.erase(0,pos);

pos = normalized.find_last_not_of(irrelevant_prefix_suffix_chars);

normalized.erase(pos+1);

normalized.erase(

(normalized.begin(),

{

mod_string; };

<

TEnum>

skip_mod_strings.end(),

inserter(normalized_skip_set, normalized_skip_set.end()),

(

& name_val : etv.

()) {

& mod_string = fNormalizeString(name_val.first);

(normalized_skip_set.find(mod_string) == normalized_skip_set.end())

TEnum& enum_val =

TEnum

(name_val.second);

smod_enum_map.emplace(mod_string, enum_val);

(

extra_smod_to_enum : extra_mod_strings_to_enums) {

smod_enum_map.emplace(

fNormalizeString(extra_smod_to_enum.first),

extra_smod_to_enum.second);

smod_enum_map;

,

,

};

extra_smod_to_enum_names

kDeprecatedOrgSubtypes,

extra_smod_to_enum_names

,

,

,

,

,

extra_smod_to_enum_names

extra_smod_to_enum_names);

extra_smod_to_enum_names

extra_smod_to_enum_names,

extra_smod_to_enum_names

extra_smod_to_enum_names,

unordered_map<CMolInfo::TBiomol, CSeq_inst::EMol>

void remove_if(Container &c, Predicate *__pred)

void transform(Container &c, UnaryFunction *op)

const TValues & GetValues(void) const

Get the list of name-value pairs.

#define ENUM_METHOD_NAME(EnumName)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static string & ToLower(string &str)

Convert string to lower case – string& version.

@ eSubtype_lat_lon

+/- decimal degrees

@ eOrigin_mut

artificially mutagenized

@ eOrigin_natmut

naturally occurring mutant

@ eSubtype_nat_host

natural host of this specimen

@ eBiomol_pre_RNA

precursor RNA of any sort really

@ eBiomol_cRNA

viral RNA genome copy intermediate

@ eBiomol_snoRNA

small nucleolar RNA

@ eBiomol_genomic_mRNA

reported a mix of genomic and cdna sequence

@ eBiomol_transcribed_RNA

transcribed RNA other than existing classes

@ eBiomol_other_genetic

other genetic material

const unordered_map< CMolInfo::TBiomol, CSeq_inst::EMol > g_BiomolEnumToMolEnum

unordered_set< string > TModNameSet

const TStringToEnumMap< CMolInfo::TBiomol > g_BiomolStringToEnum

static string s_NoNormalization(const string &mod_string)

static TStringToEnumMap< TEnum > s_InitModStringToEnumMap(const CEnumeratedTypeValues &etv, const TModNameSet &skip_mod_strings, const TStringToEnumMap< TEnum > &extra_mod_strings_to_enums, function< string(const string &)> fNormalizeString=s_NoNormalization)

TStringToEnumMap< CSubSource::ESubtype > g_InitModNameSubSrcSubtypeMap(void)

TStringToEnumMap< COrgMod::ESubtype > g_InitModNameOrgSubtypeMap(void)

string g_GetNormalizedModVal(const string &unnormalized)

TStringToEnumMap< CBioSource::EGenome > g_InitModNameGenomeMap(void)

TStringToEnumMap< CBioSource::EOrigin > g_InitModNameOriginMap(void)

unordered_map< string, TEnum > TStringToEnumMap

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