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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/mod__reader_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/readers/mod_reader.hpp Source File

29 #ifndef _MOD_READER_HPP_ 30 #define _MOD_READER_HPP_ 33 #include <unordered_map> 34 #include <unordered_set> 46 template

typename

_T1,

typename

_T2>

47 CModData

(_T1&& name, _T2&&

value

) : m_name{ std::forward<_T1>(name) }, m_value{ std::forward<_T2>(

value

) }

51 template

typename

_T>

54

m_name = std::forward<_T>(name);

57 template

typename

_T>

60

m_value = std::forward<_T>(

value

);

62 template

typename

_T>

65

m_attrib = std::forward<_T>(attrib);

69 return

!m_attrib.empty();

108 void

SetExcludedMods(

const

vector<string>& excluded_mods);

109 void

SetIgnoredMods(

const

list<string>& ignored_mods);

111 void

AddMods(

const TModList

& mods,

116 void

SetMods(

const TMods

& mods);

118 const TMods

& GetMods(

void

)

const

;

122 static const string

& GetCanonicalName(

const TModEntry

& mod_entry);

123 static const string

& AssertReturnSingleValue(

const TModEntry

& mod_entry);

124 static string

GetCanonicalName(

const string

& name);

127 static string

x_GetNormalizedString(

const string

& name);

128 static bool

x_MultipleValuesAllowed(

const string

& canonical_name);

129 static bool

x_IsDeprecated(

const string

& canonical_name);

159 static void

Apply(

const CModHandler

& mod_handler,

164 static void

Apply(

const CModHandler

& mod_handler,

171 static const string

& x_GetModName(

const TModEntry

& mod_entry);

172 static const string

& x_GetModValue(

const TModEntry

& mod_entry);

174 static bool

x_TrySeqInstMod(

const TModEntry

& mod_entry,

179 static void

x_SetStrand(

const TModEntry

& mod_entry,

184 static void

x_SetMolecule(

const TModEntry

& mod_entry,

189 static void

x_SetMoleculeFromMolType(

const TModEntry

& mod_entry,

192 static void

x_SetTopology(

const TModEntry

& mod_entry,

197 static void

x_SetHist(

const TModEntry

& mod_entry,

200 static void

x_ReportInvalidValue(

const CModData

& mod_data,

213 const string

& seqId,

237 static bool

x_FindBrackets(

const CTempString

& line,

size_t

& start,

size_t

& stop,

size_t

& eq_pos);

IObjtoolsListener * m_pMessageListener

list< CModData > TModList

FReportError FPostMessage

list< CModData > TSkippedMods

CModHandler::FReportError FReportError

CModHandler::TModEntry TModEntry

bool IsSetAttrib(void) const

CModData(_T1 &&name, _T2 &&value)

void SetAttrib(_T &&attrib)

const string & GetValue(void) const

void SetValue(_T &&value)

const string & GetName(void) const

const string & GetAttrib(void) const

function< void(const CModData &mod, const string &message, EDiagSev severity, EModSubcode subcode)> FReportError

map< string, list< CModData > > TMods

TNameSet m_IgnoredModifiers

list< CModData > TModList

unordered_map< string, string > TNameMap

TNameSet m_ExcludedModifiers

static const TNameMap sm_NameMap

static const TNameSet sm_MultipleValuesForbidden

static const TNameSet sm_DeprecatedModifiers

unordered_set< string > TNameSet

TMods::value_type TModEntry

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

CModHandler::TModList TModList

Include a standard set of the NCBI C++ Toolkit most basic headers.

EDiagSev

Severity level for the posted diagnostics.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJREAD_EXPORT

double value_type

The numeric datatype used by the parser.

const GenericPointer< typename T::ValueType > T2 value

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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