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NCBI C++ ToolKit: src/algo/align/nw/mm_aligner_threads.cpp Source File

vector<CNWAligner::TScore>* e,

vector<CNWAligner::TScore>*

,

vector<CNWAligner::TScore>*

,

vector<unsigned char>*

,

free_corner_fgap ):

m_aligner(aligner), m_rect(rect), m_E(e), m_F(

),

m_G(

), m_trace(

), m_free_corner_fgap(free_corner_fgap)

list<CNWAligner::ETranscriptSymbol>::iterator translist_pos,

free_lt_fgap,

free_rb_fgap ):

m_aligner(aligner), m_rect(rect),

m_translist_pos(translist_pos),

m_free_lt_fgap (free_lt_fgap),

m_free_rb_fgap (free_rb_fgap)

list< CNWAligner::ETranscriptSymbol >::iterator m_translist_pos

CThreadDoSM(CMMAligner *aligner, const SCoordRect *rect, list< CNWAligner::ETranscriptSymbol >::iterator translist_pos, bool free_lt_fgap, bool free_rb_fgap)

const SCoordRect * m_rect

virtual void * Main()

Derived (user-created) class must provide a real thread function.

virtual void OnExit()

Override this to execute finalization code.

const CMMAligner * m_aligner

CThreadRunOnTop(const CMMAligner *aligner, const SCoordRect *rect, vector< CNWAligner::TScore > *e, vector< CNWAligner::TScore > *f, vector< CNWAligner::TScore > *g, vector< unsigned char > *trace, bool free_corner_fgap)

virtual void * Main()

Derived (user-created) class must provide a real thread function.

vector< unsigned char > * m_trace

vector< CNWAligner::TScore > * m_F

vector< CNWAligner::TScore > * m_G

const SCoordRect * m_rect

virtual void OnExit()

Override this to execute finalization code.

vector< CNWAligner::TScore > * m_E

void x_DoSubmatrix(const SCoordRect &submatr, list< ETranscriptSymbol >::iterator translist_pos, bool left_top, bool right_bottom)

void x_RunTop(const SCoordRect &rect, vector< TScore > &vE, vector< TScore > &vF, vector< TScore > &vG, vector< unsigned char > &trace, bool lt) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

DEFINE_STATIC_FAST_MUTEX(thread_count_mutex)

unsigned int g_nwmm_thread_count

bool MM_RequestNewThread(const size_t max_threads)

int g(Seg_Gsm *spe, Seq_Mtf *psm, Thd_Gsm *tdg)

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