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NCBI C++ ToolKit: include/gui/packages/pkg_sequence_edit/miscedit_util.hpp Source File

vector<CConstRef<CObject> >

(objects::CBioseq_Handle bsh);

vector<CRef<objects::edit::CApplyObject> >

(objects::CBioseq_Handle bsh);

vector<CConstRef<CObject> >

(

objects::edit::CApplyObject&

);

objects::CSeqFeatData::ESubtype

() {

objects::CSeqFeatData::eSubtype_bad; } ;

vector<string>

(

vector<string>& values) { vector<string> rval;

rval; };

vector<CConstRef<CObject> >

(objects::CBioseq_Handle bsh);

vector<CRef<objects::edit::CApplyObject> >

(objects::CBioseq_Handle bsh);

(

&

);

vector<string>

(

vector<string>& values);

objects::CSeqFeatData::ESubtype

() {

objects::CSeqFeatData::eSubtype_bad; };

vector<CConstRef<CObject> >

(

objects::edit::CApplyObject&

);

vector<CConstRef<CObject> >

(objects::CBioseq_Handle bsh);

vector<CRef<objects::edit::CApplyObject> >

(objects::CBioseq_Handle bsh);

vector<CConstRef<CObject> >

(

objects::edit::CApplyObject&

);

objects::CSeqFeatData::ESubtype

() {

objects::CSeqFeatData::eSubtype_bad; }

vector<CConstRef<CObject> >

(objects::CBioseq_Handle bsh);

vector<CRef<objects::edit::CApplyObject> >

(objects::CBioseq_Handle bsh);

vector<CConstRef<CObject> >

(

objects::edit::CApplyObject&

);

objects::CSeqFeatData::ESubtype

() {

objects::CSeqFeatData::eSubtype_bad; }

vector<CConstRef<CObject> >

(objects::CBioseq_Handle bsh);

vector<CRef<objects::edit::CApplyObject> >

(objects::CBioseq_Handle bsh);

vector<CConstRef<CObject> >

(

objects::edit::CApplyObject&

);

objects::CSeqFeatData::ESubtype

() {

objects::CSeqFeatData::eSubtype_bad; }

vector<CConstRef<CObject> >

(objects::CBioseq_Handle bsh);

vector<CRef<objects::edit::CApplyObject> >

(objects::CBioseq_Handle bsh);

vector<CConstRef<CObject> >

(

objects::edit::CApplyObject&

);

objects::CSeqFeatData::ESubtype

() {

objects::CSeqFeatData::eSubtype_bad; }

vector<CConstRef<CObject> >

(objects::CBioseq_Handle bsh);

vector<CRef<objects::edit::CApplyObject> >

(objects::CBioseq_Handle bsh);

vector<CConstRef<CObject> >

(

objects::edit::CApplyObject&

);

vector<string>

(

&

) { vector<string> vals;

vals; }

objects::CSeqFeatData::ESubtype

() {

objects::CSeqFeatData::eSubtype_bad; }

vector<CConstRef<CObject> >

(objects::CBioseq_Handle bsh);

vector<CRef<objects::edit::CApplyObject> >

(objects::CBioseq_Handle bsh);

vector<string>

(

vector<string>& values);

objects::CScope& scope);

User-defined methods of the data storage class.

virtual string GetVal(const CObject &object)

virtual vector< string > GetVals(const CObject &object)

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

virtual bool IsEmpty(const CObject &object) const

virtual void ClearVal(CObject &object)

static CRef< ncbi::CFieldHandler > Create(const string &field_name)

virtual string GetVal(const CObject &object)

virtual bool IsEmpty(const CObject &object) const

bool x_IsNCBIFILEId(const objects::CSeq_id &seq_id)

virtual vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

virtual objects::CSeqFeatData::ESubtype GetFeatureSubtype()

virtual vector< string > GetVals(const CObject &object)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const CObject &object, CRef< objects::CScope > scope)

virtual bool AllowMultipleValues()

virtual objects::CSeqdesc::E_Choice GetDescriptorSubtype()

virtual vector< CConstRef< CObject > > GetObjects(objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint)

virtual bool IsEmpty(const CObject &object) const

virtual vector< CConstRef< CObject > > GetRelatedObjects(const objects::edit::CApplyObject &object)

virtual void ClearVal(CObject &object)

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

virtual ~CFlatFileField()

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual void SetConstraint(const string &field, CConstRef< objects::edit::CStringConstraint > string_constraint)

virtual string GetVal(const CObject &object)

virtual bool IsEmpty(const CObject &object) const

virtual void SetConstraint(const string &field, CConstRef< objects::edit::CStringConstraint > string_constraint)

virtual string GetVal(const CObject &object)

virtual bool AllowMultipleValues()

virtual string IsValid(const string &val)

virtual void ClearVal(CObject &object)

CRef< objects::edit::CStringConstraint > m_StringConstraint

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

virtual vector< string > IsValid(const vector< string > &values)

virtual vector< string > GetVals(const CObject &object)

static EGeneralIDPart GetGeneralIDPart_FromName(const string &name)

virtual string GetVal(const CObject &object)

CGeneralIDField(EGeneralIDPart part, const string &db=kEmptyStr)

EGeneralIDPart m_GeneralIDPart

static const string & GetName_GeneralIDPart(EGeneralIDPart stype_part)

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

static bool IsGenomeProject(const objects::CUser_object &user)

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

static bool IsGenomeProjectID(const objects::CUser_field &field)

virtual bool IsEmpty(const CObject &object) const

virtual string GetVal(const CObject &object)

virtual objects::CSeqdesc::E_Choice GetDescriptorSubtype()

virtual string IsValid(const string &val)

virtual vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

virtual objects::CSeqFeatData::ESubtype GetFeatureSubtype()

virtual void ClearVal(CObject &object)

virtual bool AllowMultipleValues()

virtual void SetConstraint(const string &field, CConstRef< objects::edit::CStringConstraint > string_constraint)

virtual vector< string > GetVals(const CObject &object)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const CObject &object, CRef< objects::CScope > scope)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const objects::edit::CApplyObject &object)

virtual vector< CConstRef< CObject > > GetObjects(objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint)

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

virtual bool AllowMultipleValues()

virtual void SetConstraint(const string &field, CConstRef< objects::edit::CStringConstraint > string_constraint)

virtual void ClearVal(CObject &object)

virtual objects::CSeqdesc::E_Choice GetDescriptorSubtype()

virtual vector< CConstRef< CObject > > GetRelatedObjects(const objects::edit::CApplyObject &object)

virtual string GetVal(const CObject &object)

virtual vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

virtual vector< CConstRef< CObject > > GetObjects(objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint)

virtual bool IsEmpty(const CObject &object) const

virtual vector< string > GetVals(const CObject &object)

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const CObject &object, CRef< objects::CScope > scope)

virtual objects::CSeqFeatData::ESubtype GetFeatureSubtype()

CRef< CCmdComposite > SetValCmd(CConstRef< CObject > object, const string &val, objects::edit::EExistingText existing_text, objects::CScope &scope, bool update_mrna_product=false)

bool AllowMultipleValues()

CRef< ncbi::CFieldHandler > m_FieldHandler

CRef< CCmdComposite > SwapValCmd(CRef< objects::edit::CApplyObject > src_object, CRef< objects::edit::CApplyObject > dst_object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, bool update_mrna_product)

CRef< CCmdComposite > ConvertValCmd(CRef< objects::edit::CApplyObject > src_object, CRef< objects::edit::CApplyObject > dst_object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, objects::ECapChange cap_change, const bool leave_original, const string &field_name, const bool update_mrna_product)

CRef< CSrcTableColumnBase > m_Src

CRef< CObject > GetNewObject(CConstRef< CObject > obj)

vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

bool IsProductField(void)

vector< CConstRef< CObject > > GetRelatedObjects(const objects::edit::CApplyObject &object)

CRef< CCmdComposite > x_GetMrnaUpdate(objects::edit::CApplyObject &src_object, objects::edit::CApplyObject &dst_object, CMiscSeqTableColumn &other, bool &changed_src)

void AddApplyObjectValue(const objects::edit::CApplyObject &object, const string &field, set< string > &values)

void ClearVal(CObject &object)

CRef< CCmdComposite > CopyValCmd(CRef< objects::edit::CApplyObject > src_object, CRef< objects::edit::CApplyObject > dst_object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, bool update_mrna_product)

vector< CConstRef< CObject > > GetRelatedObjects(const CObject &object, CRef< objects::CScope > scope)

static bool s_IsSequenceIDField(const string &field)

CRef< CCmdComposite > SwapValCmd(objects::edit::CApplyObject &object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, bool update_mrna_product)

CRef< CCmdComposite > ParseValCmd(CRef< objects::edit::CApplyObject > src_object, CRef< objects::edit::CApplyObject > dst_object, CMiscSeqTableColumn &other, const objects::edit::CParseTextOptions &parse_options, objects::edit::EExistingText existing_text, bool update_mrna_product)

int CountConflicts(set< CConstRef< CObject > > objs, const string &val)

bool IsEmpty(const CObject &object) const

vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint)

objects::CSeqdesc::E_Choice GetDescriptorSubtype()

CRef< CCmdComposite > ConvertValCmd(objects::edit::CApplyObject &object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, objects::ECapChange cap_change, const bool leave_original, const string &field_name, const bool update_mrna_product)

void SetConstraint(string field, CRef< objects::edit::CStringConstraint > string_constraint)

CRef< CCmdComposite > GetReplacementCommand(CConstRef< CObject >, CRef< CObject > newobj, objects::CScope &scope, const string &cmd_name)

CRef< CCmdComposite > CopyValCmd(objects::edit::CApplyObject &object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, bool update_mrna_product)

vector< string > GetVals(const CObject &object)

objects::CSeqFeatData::ESubtype GetFeatureSubtype()

CRef< CCmdComposite > ParseValCmd(objects::edit::CApplyObject &object, CMiscSeqTableColumn &other, const objects::edit::CParseTextOptions &parse_options, objects::edit::EExistingText existing_text, bool update_mrna_product)

CMiscSeqTableColumn(const string &name)

vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

CRef< CCmdComposite > x_GetMrnaUpdate(objects::edit::CApplyObject &object, CMiscSeqTableColumn &other)

CRef< CFeatureSeqTableColumnBase > m_Feature

vector< CRef< objects::edit::CApplyObject > > GetRelatedApplyObjects(objects::edit::CApplyObject &object)

string IsValid(const string &val)

vector< CConstRef< CObject > > GetObjects(objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint)

string GetVal(const CObject &object)

CRef< CCmdComposite > ClearValCmd(CConstRef< CObject > object, bool update_mrna_product, objects::CScope &scope)

bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

void GetApplyObjectsValues(objects::CSeq_entry_Handle seh, const string &constraint_field, set< string > &values)

void SetScope(CRef< objects::CScope > scope)

virtual void ClearVal(CObject &object)

virtual objects::CSeqFeatData::ESubtype GetFeatureSubtype()

virtual objects::CSeqdesc::E_Choice GetDescriptorSubtype()

virtual vector< CConstRef< CObject > > GetRelatedObjects(const CObject &object, CRef< objects::CScope > scope)

virtual void SetConstraint(const string &field_name, CConstRef< objects::edit::CStringConstraint > string_constraint)

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

virtual bool AllowMultipleValues()

virtual vector< string > GetVals(const CObject &object)

virtual vector< CConstRef< CObject > > GetObjects(objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const objects::edit::CApplyObject &object)

virtual bool IsEmpty(const CObject &object) const

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual string GetVal(const CObject &object)

virtual vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

virtual vector< string > GetVals(const CObject &object)

virtual void ClearVal(CObject &object)

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

virtual bool SetVal(objects::CUser_field &field, const string &newValue, objects::edit::EExistingText existing_text)

unsigned int m_NrOfSetting

virtual void ClearVal(CObject &object)

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

virtual vector< string > GetVals(const CObject &object)

virtual bool SetVal(objects::CUser_field &field, const string &newValue, objects::edit::EExistingText existing_text)

objects::CUser_object::TData m_FieldValuePairs

void x_InsertFieldAtCorrectPosition(objects::CUser_object &user, CRef< objects::CUser_field > field)

virtual bool SetVal(objects::CUser_field &field, const string &newValue, objects::edit::EExistingText existing_text)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const CObject &object, CRef< objects::CScope > scope)

virtual vector< string > GetVals(const CObject &object)

CStructCommFieldValuePair(const string &fieldname)

virtual void ClearVal(CObject &object)

virtual string GetVal(const CObject &object)

virtual objects::CSeqdesc::E_Choice GetDescriptorSubtype()

virtual bool IsEmpty(const CObject &object) const

virtual vector< CConstRef< CObject > > GetObjects(objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint)

virtual bool SetVal(CObject &object, const string &val, objects::edit::EExistingText existing_text)

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const objects::edit::CApplyObject &object)

virtual vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

virtual void SetConstraint(const string &field_name, CConstRef< objects::edit::CStringConstraint > string_constraint)

const objects::CUser_object * x_GetUser_Object(const CObject &object) const

virtual bool AllowMultipleValues()

virtual objects::CSeqFeatData::ESubtype GetFeatureSubtype()

virtual void SetConstraint(const string &field_name, CConstRef< objects::edit::CStringConstraint > string_constraint)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const CObject &object, CRef< objects::CScope > scope)

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual vector< CConstRef< CObject > > GetRelatedObjects(const objects::edit::CApplyObject &object)

virtual vector< CConstRef< CObject > > GetObjects(objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint)

virtual objects::CSeqdesc::E_Choice GetDescriptorSubtype()

virtual objects::CSeqFeatData::ESubtype GetFeatureSubtype()

objects::CSeqdesc::E_Choice m_Subtype

objects::CSeqdesc::E_Choice GetSubtype()

void SetSubtype(objects::CSeqdesc::E_Choice subtype)

virtual bool AllowMultipleValues()

virtual vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

IWorkbench is the central interface in the application framework.

Include a standard set of the NCBI C++ Toolkit most basic headers.

vector< SConstScopedObject > TConstScopedObjects

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIPKG_SEQUENCE_EDIT_EXPORT

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

bool DoesObjectMatchFieldConstraint(const CObject &object, const string &field_name, CRef< objects::edit::CStringConstraint > string_constraint, CRef< objects::CScope > scope)

int CountColumnConflicts(CRef< CMiscSeqTableColumn > col, vector< CConstRef< CObject > > objs, const string &val)

string MakeTableMetaInfoString(objects::edit::EExistingText rule, bool erase_blanks)

CRef< CCmdComposite > GetCommandFromApplyObject(objects::edit::CApplyObject &obj)

bool FocusedOnNucleotides(TConstScopedObjects &objects, const objects::CSeq_entry_Handle &tse)

vector< CRef< CMiscSeqTableColumn > > TMiscSeqTableColumnList

CRef< CCmdComposite > ConvertValCmd(CConstRef< CObject > object, CRef< CMiscSeqTableColumn > col1, CRef< CMiscSeqTableColumn > col2, objects::edit::EExistingText existing_text, objects::CScope &scope)

bool DoesApplyObjectMatchFieldConstraint(const objects::edit::CApplyObject &object, const string &field_name, CRef< objects::edit::CStringConstraint > string_constraint)

CRef< CCmdComposite > GetPropagateDBLinkCmd(objects::CSeq_entry_Handle entry)

int GetNumberOfViewedBioseqs(TConstScopedObjects &objects)

void GetViewObjects(IWorkbench *workbench, TConstScopedObjects &objects)

CRef< objects::CSeq_table > GetMiscTableFromSeqEntry(const vector< string > &fields, objects::CSeq_entry_Handle entry)

CRef< objects::CUser_field > MakeTableMetaInfoField(objects::edit::EExistingText rule, bool erase_blanks)

void AddMiscColumnsToTable(CRef< objects::CSeq_table > table, const vector< string > &fields, objects::CSeq_entry_Handle entry)

bool FocusedOnAll(TConstScopedObjects &objects, const objects::CSeq_entry_Handle &tse)

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