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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/misc_2discrepancy_2utils_8cpp_source.html below:

NCBI C++ ToolKit: src/misc/discrepancy/utils.cpp Source File

(!comment.empty()) {

(feat.IsSetComment() && !feat.GetComment().empty()) {

(feat.GetComment().find(comment) != string::npos) {

feat.SetComment() +=

;

feat.SetComment() += comment;

feat.SetComment(comment);

.IsSetName() &&

.GetName().size() > 0 ?

.GetName().front() :

;

(

& it : feat.

()) {

(it->IsSetData() && it->GetData().IsProt()) {

(desc ==

) {

&feat->

().SetBiosrc();

namespace ncbi::objects::

CBioseq_Handle GetBioseqFromSeqLoc(const CSeq_loc &loc, CScope &scope, CScope::EGetBioseqFlag flag=CScope::eGetBioseq_Loaded)

Retrieve the Bioseq Handle from a location.

const CSeq_feat & GetOriginalFeature(void) const

Get original feature with unmapped location/product.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

bool IsSetData(void) const

the specific data Check if a value has been assigned to Data data member.

bool IsSetXref(void) const

cite other relevant features Check if a value has been assigned to Xref data member.

const TData & GetData(void) const

Get the Data member data.

void SetData(TData &value)

Assign a value to Data data member.

const TProduct & GetProduct(void) const

Get the Product member data.

bool IsBiosrc(void) const

Check if variant Biosrc is selected.

const TProt & GetProt(void) const

Get the variant data.

const TXref & GetXref(void) const

Get the Xref member data.

bool IsSetProduct(void) const

product of process Check if a value has been assigned to Product data member.

bool IsSource(void) const

Check if variant Source is selected.

TSource & SetSource(void)

Select the variant.

void AddComment(CSeq_feat &feat, const string &comment)

CBioSource * GetBioSourceFromContext(CDiscrepancyObject *obj, CDiscrepancyContext &context)

static string GetProductName(const CProt_ref &prot)

Utility macros and typedefs for exploring NCBI objects from seq.asn.

static CS_CONTEXT * context

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