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NCBI C++ ToolKit: src/app/cn3d/messenger.cpp Source File

(!m->first->GetParentOfType(&

))

;

((m->first->IsSolvent() || m->first->IsHeterogen()) &&

hetsRedrawn.

(

) != hetsRedrawn.

())

;

hetsRedrawn[object] =

;

(

);

(*q)->SaveDialog(prompt);

MoleculeHighlightMap::const_iterator h =

.find(identifier);

(index == -1)

;

(index < 0 || index >= (

)h->second.size()) {

(

);

h->second[index];

StructureSet::ObjectList::const_iterator o, oe =

->objects.

();

ChemicalGraph::MoleculeMap::const_iterator m, me;

(o=

->objects.

(); o!=oe; ++o) {

(m=(*o)->graph->molecules.begin(), me=(*o)->graph->molecules.end(); m!=me; ++m) {

(m->second->identifier == identifier)

(seqIndexFrom > seqIndexTo || seqIndexFrom >= sequence->

() || seqIndexTo >= sequence->

()) {

(

);

(

=seqIndexFrom;

<=seqIndexTo; ++

) h->second[

] =

;

(*q)->MakeSequenceVisible(sequence->

);

MoleculeHighlightMap::const_iterator h, he =

.end();

newHighlights[sequence->

] = h->second;

(

);

(seqIndexFrom > seqIndexTo || seqIndexFrom >= sequence->

() || seqIndexTo >= sequence->

()) {

(

);

(

=seqIndexFrom;

<=seqIndexTo; ++

) h->second[

] =

;

(h->second[

] ==

)

;

(

== sequence->

())

(indexFrom > indexTo || indexFrom >= identifier->

|| indexTo >= identifier->

) {

(

);

MoleculeHighlightMap::iterator h =

.find(identifier);

(

=indexFrom;

<=indexTo; ++

) h->second[

] = !h->second[

];

(

=0;

<h->second.size(); ++

)

(h->second[

] ==

)

;

(

== h->second.size())

(residueIDFrom > residueIDTo || residueIDFrom < 1 || residueIDTo < 1 ||

residueIDFrom > (

)molecule->

() || residueIDTo > (

)molecule->

()) {

(

);

(

=residueIDFrom-1;

<=residueIDTo-1; ++

) h->second[

] =

;

(scrollViewersTo) {

(*t)->MakeResidueVisible(molecule, residueIDFrom - 1);

(scrollViewersTo) {

(*t)->MakeResidueVisible(molecule, residueID - 1);

MoleculeHighlightMap::const_iterator h, he =

.end();

MoleculeHighlightMap::const_iterator h, he =

.end();

MoleculeHighlightMap::const_iterator h, he =

.end();

(h->first->HasStructure())

(*residues)[h->first] = h->second;

(residues->size() > 0);

MoleculeHighlightMap::const_iterator h, he =

.end();

(h ==

.begin()) mmdbID = h->first->mmdbID;

(

);

(

);

bas->

().push_back(bid);

bfs->SetFeatures().push_back(bf);

bf->SetLocation().SetSubgraph(*cgp);

(first < h->second.size()) {

(first < h->second.size() && !h->second[

]) ++

;

(

>= h->second.size())

;

(

+ 1 < h->second.size() && h->second[

+ 1]) ++

;

rip->SetMolecule_id().Set(h->first->moleculeID);

rip->SetFrom().Set(

+ 1);

rip->SetTo().Set(

+ 1);

MoleculeHighlightMap::const_iterator h, he =

.end();

(

);

firstInterval =

;

(first < h->second.size()) {

(first < h->second.size() && !h->second[

]) ++

;

(

>= h->second.size())

;

(

+ 1 < h->second.size() && h->second[

+ 1]) ++

;

firstInterval =

;

(*q)->SetWindowTitle();

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CBiostruc_feature_set –.

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

CResidue_interval_pntr –.

void RedrawMolecule(int moleculeID) const

OpenGLRenderer * renderer

StructureSet * structureSet

RedrawSequenceViewerList redrawSequenceViewers

bool redrawAllSequenceViewers

void SetAllWindowTitles(void) const

void RedrawMoleculesWithIdentifier(const MoleculeIdentifier *identifier, const StructureSet *set)

void RestoreCachedHighlights(void)

void NewSequenceViewerFont(void)

void ToggleHighlights(const Sequence *sequence, unsigned int seqIndexFrom, unsigned int seqIndexTo)

void PostRedrawMolecule(const Molecule *molecule)

void GetHighlights(MoleculeHighlightMap *copyHighlights)

ncbi::objects::CBiostruc_annot_set * CreateBiostrucAnnotSetForHighlightsOnSingleObject(void) const

bool IsHighlighted(const Molecule *molecule, int residueID) const

bool IsHighlightedAnywhere(const MoleculeIdentifier *identifier) const

bool IsFileMessengerActive(void) const

void SequenceWindowsSave(bool prompt)

void RemoveStructureWindow(const StructureWindow *structureWindow)

MoleculeHighlightMap highlightCache

bool GetHighlightedResiduesWithStructure(MoleculeHighlightMap *residues) const

bool highlightingSuspended

void PostRedrawSequenceViewer(ViewerBase *viewer)

void KeepHighlightsOnlyOnSequence(const Sequence *sequence)

MoleculeHighlightMap highlights

void HighlightAndShowSequence(const Sequence *sequence)

void UnPostRedrawAllSequenceViewers(void)

bool RemoveAllHighlights(bool postRedraws)

void ToggleHighlight(const Molecule *molecule, int residueID, bool scrollViewersTo=false)

void FileMessengerSend(const std::string &toApp, const std::string &command, const std::string &data)

void RemoveHighlights(const Sequence *sequence, unsigned int seqIndexFrom, unsigned int seqIndexTo)

void PostRedrawAllStructures(void)

bool GetHighlightsForSelectionMessage(std::string *data) const

void UnPostRedrawSequenceViewer(ViewerBase *viewer)

SequenceViewerList sequenceViewers

void RemoveSequenceViewer(const ViewerBase *sequenceViewer)

RedrawMoleculeList redrawMolecules

void SuspendHighlighting(bool suspend)

void PostRedrawAllSequenceViewers(void)

StructureWindow * structureWindow

void AddHighlights(const Sequence *sequence, unsigned int seqIndexFrom, unsigned int seqIndexTo)

void SetHighlights(const MoleculeHighlightMap &newHighlights)

void CacheHighlights(void)

void ProcessRedraws(void)

std::map< const MoleculeIdentifier *, std::vector< bool > > MoleculeHighlightMap

void UnPostStructureRedraws(void)

bool IsAnythingHighlighted(void) const

static const int VALUE_NOT_SET

const MoleculeIdentifier * identifier

unsigned int NResidues(void) const

void NewView(double eyeTranslateToAngleDegrees=0.0) const

const MoleculeIdentifier * identifier

unsigned int Length(void) const

const ChemicalGraph * graph

void SetWindowTitle(void)

void SendCommand(const std::string &toApp, const std::string &command, const std::string &data)

bool IsFileMessengerActive(void) const

const_iterator end() const

const_iterator find(const key_type &key) const

const_iterator begin() const

const_iterator end() const

Include a standard set of the NCBI C++ Toolkit most basic headers.

bool SeqIdToIdentifier(const CRef< ncbi::objects::CSeq_id > &seqID, string &identifier)

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static DLIST_TYPE *DLIST_NAME() last(DLIST_LIST_TYPE *list)

TObjectType * Release(void)

Release a reference to the object and return a pointer to the object.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

TInterval & SetInterval(void)

Select the variant.

TResidues & SetResidues(void)

Select the variant.

TId & SetId(void)

Assign a value to Id data member.

TFeatures & SetFeatures(void)

Assign a value to Features data member.

TMmdb_id & SetMmdb_id(void)

Select the variant.

for(len=0;yy_str[len];++len)

if(yy_accept[yy_current_state])

Messenger * GlobalMessenger(void)

static Messenger messenger

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