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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/merge__tree__app_8cpp.html below:

NCBI C++ ToolKit: src/algo/align/mergetree/app/merge_tree_app.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbithr.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbistr.hpp>
#include <corelib/ncbidiag.hpp>
#include <corelib/ncbistd.hpp>
#include <corelib/ncbiobj.hpp>
#include <corelib/ncbiutil.hpp>
#include <corelib/ncbi_system.hpp>
#include <connect/ncbi_util.h>
#include <connect/ncbi_core_cxx.hpp>
#include <serial/serialbase.hpp>
#include <serial/serial.hpp>
#include <objects/seqloc/seqloc__.hpp>
#include <objects/seqalign/seqalign__.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objtools/data_loaders/asn_cache/asn_cache_loader.hpp>
#include <misc/data_loaders_util/data_loaders_util.hpp>
#include <util/sync_queue.hpp>
#include <algo/align/mergetree/merge_tree.hpp>

Include dependency graph for merge_tree_app.cpp:

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Classes struct   STimerCallbackData   class   CMergeTreeThread   class   CMergeOutputThread   class   CMergeyApp   Macros #define  MARKLINE   cerr << __LINE__ << endl;   Typedefs typedef vector< CRef< objects::CSeq_align > >  TAlignVec   typedef CSyncQueue< TAlignVec, deque< TAlignVec >, CSyncQueue_Traits_ConcurrencyOn >  TSyncQueue   Functions   USING_SCOPE (objects)   string  s_Strand (ENa_strand strand)   bool  s_TimerCallback (void *Data)   int  main (int argc, const char *argv[])   Variables   USING_NCBI_SCOPE   Macro Definition Documentation ◆ MARKLINE #define MARKLINE   cerr << __LINE__ << endl;

Definition at line 65 of file merge_tree_app.cpp.

Typedef Documentation ◆ TAlignVec typedef vector<CRef<objects::CSeq_align> > TAlignVec

Definition at line 105 of file merge_tree_app.cpp.

◆ TSyncQueue typedef CSyncQueue<TAlignVec, deque<TAlignVec>, CSyncQueue_Traits_ConcurrencyOn> TSyncQueue

Definition at line 106 of file merge_tree_app.cpp.

Function Documentation ◆ main() int main ( int  argc, const char *  argv[]  )

Definition at line 518 of file merge_tree_app.cpp.

References CNcbiApplicationAPI::AppMain(), eDS_Default, and NULL.

◆ s_Strand() string s_Strand ( ENa_strand  strand )

Definition at line 74 of file merge_tree_app.cpp.

References eNa_strand_both, eNa_strand_minus, and eNa_strand_plus.

◆ s_TimerCallback() bool s_TimerCallback ( void *  Data )

Definition at line 89 of file merge_tree_app.cpp.

References CTime::eCurrent, CTimeSpan::GetAsDouble(), STimerCallbackData::SecondsLimit, and STimerCallbackData::StartTime.

Referenced by CMergeTreeThread::Main(), and CMergeyApp::Run().

◆ USING_SCOPE() USING_SCOPE ( objects  ) Variable Documentation ◆ USING_NCBI_SCOPE USING_NCBI_SCOPE

Definition at line 68 of file merge_tree_app.cpp.

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