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NCBI C++ ToolKit: src/algo/align/ngalign/merge_tree_aligner.cpp Source File

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QueryIter, AccumResults->Get()) {

& QueryAligns = *QueryIter->second;

(BestRank > m_Threshold || BestRank == -1) {

<<

);

(*AlignIter)->SetNamedScore(

, 1.0);

(!Results->

().empty()) {

(

<<

<< Results->

().size() <<

);

int GetBestRank(const string AssemblyAcc="") const

TAssemblyToSubjectSet & Get()

CConstRef< objects::CSeq_id > GetQueryId() const

void Merge(const list< CRef< objects::CSeq_align > > &Input, list< CRef< objects::CSeq_align > > &Output)

void SetScope(objects::CScope *Scope)

void SetScoring(CMergeTree::SScoring Scoring)

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Info(CExceptionArgs_Base &args)

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

Tdata & Set(void)

Assign a value to data member.

list< CRef< CSeq_align > > Tdata

const Tdata & Get(void) const

Get the member data.

Magic spell ;-) needed for some weird compilers... very empiric.

Defines NCBI C++ exception handling.

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