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NCBI C++ ToolKit: include/algo/align/mergetree/merge_tree.hpp Source File

{ this->Callback = callback; this->CallbackData = callback_data;

callback; }

objects::CSeq_id_Handle QueryIDH,

objects::CSeq_id_Handle SubjtIDH);

pair<objects::CSeq_id_Handle, objects::ENa_strand>

;

pair<TSeqIdPair, TSeqIdPair>

;

objects::CSeq_id_Handle QueryIDH, objects::CSeq_id_Handle SubjtIDH,

objects::CBioseq_Handle QueryBSH, objects::CBioseq_Handle SubjtBSH,

static CRef< CScope > m_Scope

deque< SFindBeforesIterFrame > TFrameBuffer

bool(* TInterruptFnPtr)(void *callback_data)

pair< TSeqIdPair, TSeqIdPair > TMapKey

CMergeTree::TFrameBuffer m_FrameBuffer

map< TMapKey, TAlignVec > TAlignGroupMap

void SetScope(objects::CScope *Scope)

vector< CRef< objects::CSeq_align > > TAlignVec

void SetScoring(CMergeTree::SScoring Scoring)

CMergeTree::TInterruptFnPtr Callback

CMergeTree::TBitVec m_Inserted

objects::CScope * m_Scope

pair< objects::CSeq_id_Handle, objects::ENa_strand > TSeqIdPair

CMergeTree::SScoring m_Scoring

CMergeTree::TInterruptFnPtr SetInterruptCallback(CMergeTree::TInterruptFnPtr callback, void *callback_data)

Include a standard set of the NCBI C++ Toolkit most basic headers.

The NCBI C++ standard methods for dealing with std::string.

vector< CEquivRange > TEquivList

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Defines NCBI C++ diagnostic APIs, classes, and macros.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

void Merge(wxMenu &menu_1, const wxMenu &menu_2)

merges all items form menu_2 into menu_1, preserving the structure if possible

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