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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/merge__biosources_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/merge_biosources.cpp Source File

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50  bool

modified =

false

;

56

vector<CSeqdesc_CI> descs;

57

vector<const CBioSource*> biosources;

58

vector<CSeq_feat_Handle> feats;

61  const CBioSource

* biosource = &source_ci->GetSource();

62

biosources.push_back(biosource);

63

descs.push_back(source_ci);

69  const CBioSource

* biosource = &feat_ci->GetData().GetBiosrc();

70

biosources.push_back(biosource);

72

feats.push_back(feat_ci->GetSeq_feat_Handle());

75  for

(

size_t i

= 0;

i

< biosources.size();

i

++)

76  if

(biosources[

i

] !=

NULL

)

78  for

(

size_t

j =

i

+ 1; j < biosources.size(); j++)

79  if

(biosources[j] !=

NULL

)

84  if

(new_biosources[

i

])

85

new_biosource->

Assign

(*new_biosources[

i

]);

87

new_biosource->

Assign

(*biosources[

i

]);

90

new_feat->

SetData

().SetBiosrc(*new_biosource);

98

biosources[j] =

NULL

;

104

biosources[j] =

NULL

;

110  for

(

size_t i

= 0;

i

< new_biosources.size();

i

++)

111  if

(new_biosources[

i

])

124

new_feat->

Assign

(*feats[

i

].GetOriginalSeq_feat());

125

new_feat->

SetData

().SetBiosrc(*new_biosources[

i

]);

static CSeq_entry_Handle GetSeq_entry_Handle(TTypeInfo type, TConstObjectPtr ptr, CScope &scope)

static CRef< CBioSource > BioSrcFromFeat(const CSeq_feat &f)

Get BioSource from feature to use for source descriptor.

static bool MergeDupBioSources(CSeq_descr &descr)

static bool AreBioSourcesMergeable(const CBioSource &src1, const CBioSource &src2)

void AddCommand(IEditCommand &command)

static CRef< CCmdComposite > apply(objects::CSeq_entry_Handle tse)

namespace ncbi::objects::

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void SetData(TData &value)

Assign a value to Data data member.

TSource & SetSource(void)

Select the variant.

@ e_Source

source of materials, includes Org-ref

USING_SCOPE(ncbi::objects)

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