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35 #ifndef __MB_INDEXED_LOOKUP__ 36 #define __MB_INDEXED_LOOKUP__ 45 #define LAST_VOL_IDX_INIT (-1) 46 #define LAST_VOL_IDX_NULL (-2)Ungapped extension structures that are common to nucleotide and protein extension routines.
Structure and function definitions for BLAST parameter structures, which are internal to the CORE of ...
int16_t Int2
2-byte (16-bit) signed integer
int32_t Int4
4-byte (32-bit) signed integer
unsigned int
A callback function used to compare two keys in a database.
int(* T_MB_IdbCheckOid)(Int4 oid, Int4 *last_vol_id)
Function pointer type to check index seeds availability for oid.
void(* T_MB_IdxEndSearchIndication)(Int4 last_vol_id)
Function pointer type to indicate end of preliminary search by the thread to the indexing library.
unsigned long(* T_MB_IdbGetResults)(Int4 oid, Int4 chunk, BlastInitHitList *init_hitlist)
Function pointer type to retrieve hits from an indexed database.
Int2 MB_IndexedWordFinder(BLAST_SequenceBlk *subject, BLAST_SequenceBlk *query, BlastQueryInfo *query_info, LookupTableWrap *lookup_wrap, Int4 **matrix, const BlastInitialWordParameters *word_params, Blast_ExtendWord *ewp, BlastOffsetPair *offset_pairs, Int4 max_hits, BlastInitHitList *init_hitlist, BlastUngappedStats *ungapped_stats)
Finds all runs of a specified number of exact matches between two nucleotide sequences.
Structure to hold a sequence.
Structure to hold all initial HSPs for a given subject sequence.
Parameter block that contains a pointer to BlastInitialWordOptions and the values derived from it.
The query related information.
Structure containing hit counts from the ungapped stage of a BLAST search.
Structure for keeping initial word extension information.
Wrapper structure for different types of BLAST lookup tables.
This symbol enables the verbose option in makeblastdb and other BLAST+ search command line applicatio...
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