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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/mate_pair_glyph.cpp Source File

, m_LibraryId(eLibrary_NotSet)

, m_ErrorType(eError_NotSet)

verticalOffset = bar_h;

(lcl_p.

>= t_y && lcl_p.

<= t_y + bar_h) {

&

= aln_g->GetRange();

(lcl_p.

>=

.GetFrom() && lcl_p.

<=

.GetTo()) {

aln_g->GetTooltip(p, tt, t_title);

t_y += verticalOffset;

verticalOffset = bar_h;

t_y -= verticalOffset;

p_areas->push_back(area);

(*iter)->GetObjects(objs);

( (*iter)->HasObject(obj) ) {

(*iter)->GetSignature();

(*iter)->SetVisible(

);

(*iter)->ApplyFading();

(*iter)->DrawPWAlignElem(rcm_pw,

,

, c_fg, c_seq, c_mis);

(fade_factor != 1.) {

gl.

(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA);

gl.

(GL_LINE_STIPPLE);

(inter_r.

()) {

from =

.GetFrom() <

.GetFrom() ?

.GetTo() :

.GetTo();

to =

.GetFrom() <

.GetFrom() ?

.GetFrom() :

.GetFrom();

->

(from + gap, yy + bar_h * 0.5f - 1.0, to + gap, yy + bar_h * 0.5f - 1.0);

(*iter)->Update(

);

range((*iter)->GetLeft(), (*iter)->GetRight());

(*iter)->SetTop(yTop);

*title =

;

(

.length() > 0) *title = *title +

;

(*iter)->GetTitle(&

,

);

*title = *title +

;

CRgbaColor m_FGOrientation

CRgbaColor m_FGContraAlign

CRgbaColor m_SeqNonUnique

CGlTextureFont m_LabelFont

CRgbaColor m_SeqOrientation

CRgbaColor m_SeqMismatchNo

CRgbaColor m_SeqMismatchNonUnique

CRgbaColor m_SeqMismatchDistance

CRgbaColor m_SeqMismatchOrientation

virtual void GetObjects(vector< CConstRef< CObject > > &objs) const

retrieve CObjects corresponding to this CSeqGlyph.

CRef< objects::CSeq_loc > m_Location

bool IsPairSelected(const CAlignGlyph *pw_aln) const

virtual const TIntervals & GetIntervals(void) const

access sub-intervals (if any).

virtual bool IsClickable() const

Query if this glyph is clickable.

CMatePairGlyph(const TAlignList &aligns)

virtual bool HasObject(CConstRef< CObject > obj) const

check if the wrapped object(s) is the one.

vector< CRef< CAlignGlyph > > TAlignList

virtual TSeqRange GetRange(void) const

get the total range of this object.

virtual string GetSignature() const

return signature for this glyph.

EErrorType GetError() const

virtual void GetTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

virtual const objects::CSeq_loc & GetLocation(void) const

access the position of this object.

void x_GetTitle(string *title, CLabel::ELabelType type) const

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

vector< CConstRef< CObject > > m_ObjSel

virtual bool NeedTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Check if need to show tooltip.

CConstRef< CMatePairConfig > m_Config

virtual CConstRef< CObject > GetObject(TSeqPos pos) const

access our core component - we wrap an object(s) of some sort.

virtual void x_Draw() const

The default renderer for this layout object.

void TextOut(const CGlTextureFont *font, const char *text, TModelUnit x, TModelUnit y, bool center, bool adjust_flip=true) const

TModelRange IntersectVisible(const CSeqGlyph *obj) const

TVPUnit SeqToScreenXClipped(const TModelUnit &size) const

void DrawLine(TModelUnit x1, TModelUnit y1, TModelUnit x2, TModelUnit y2) const

void DrawSelection(const TModelRect &rc) const

TModelUnit SeqToScreen(const TModelUnit &size) const

convert from sequence positions to screen pixels

TModelUnit ScreenToSeq(const TModelUnit &size) const

convert from screen pixels to sequence positions

bool IsFlippedStrand() const

const CRgbaColor & GetSelLabelColor() const

bool WillLabelFit(const TModelRect &rc) const

class CRgbaColor provides a simple abstraction for managing colors.

CRenderingContext * m_Context

the rendering context

virtual void SetHeight(TModelUnit h)

virtual TModelUnit GetRight() const

virtual void SetWidth(TModelUnit w)

virtual void SetLeft(TModelUnit l)

virtual TModelUnit GetHeight() const

float GetFadeFactor() const

size_t GetTearline() const

size_t GetVisible() const

void x_Local2World(TModelPoint &p) const

Transform the coordiantes from local coord. to world coord.

virtual TModelUnit GetWidth() const

virtual TModelUnit GetLeft() const

TModelRect GetModelRect() const

get the bounding box.

vector< CHTMLActiveArea > TAreaVector

void x_World2Local(TModelPoint &p) const

Transform the coordiante from world coord. to local coord.

bool GetNamedScore(const string &id, int &score) const

Get score.

virtual const objects::CSeq_id & GetSeqId(TNumrow row) const =0

vector< TSeqRange > TIntervals

virtual IAlnExplorer::TNumrow GetAnchor() const =0

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define REVERSE_ITERATE(Type, Var, Cont)

ITERATE macro to reverse sequence through container elements.

virtual bool HasObject(CConstRef< CObject > obj) const

check if the wrapped object(s) is the one.

const IAlnGraphicDataSource & GetAlignMgr(void) const

Inline methods.

const objects::CSeq_align_Handle & GetOrigAlignment(void) const

virtual const objects::CSeq_loc & GetLocation(void) const

access the position of this object.

virtual void Enable(GLenum glstate)=0

virtual void LineStipple(GLint factor, GLushort pattern)=0

Set line stipple pattern: glLineStipple(). Deprecated in gl 3.2+.

virtual void BlendFunc(GLenum sfactor, GLenum dfactor)=0

Options to be used when GL_BLEND is enabled.

IRender & GetGl()

convenience function for getting current render manager

virtual TModelUnit TextHeight(const CGlTextureFont *font) const =0

CRange< TModelUnit > TModelRange

virtual void Disable(GLenum glstate)=0

glDisable()

virtual void LineWidth(GLfloat w)=0

Set line width for drawing: glLineWidth()

virtual void ColorC(const CRgbaColor &c)=0

Set current color (glColor{3,4}{f,d}{v,})

string Truncate(const char *text, TModelUnit w, ETruncate trunc=eTruncate_Ellipsis) const

Truncate text to the secified width.

CConstRef< CSeq_align > GetSeq_align(void) const

Get const reference to current seq-align.

void Reset(void)

Reset reference object.

bool NotEmpty(void) const THROWS_NONE

Check if CConstRef is not empty – pointing to an object and has a non-null value.

position_type GetLength(void) const

TThisType & CombineWith(const TThisType &r)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static const sljit_gpr r1

static const sljit_gpr r2

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