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NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/match_feat_table_dlg.cpp Source File

38 #include <wx/imaglist.h> 40 #include <wx/stattext.h> 41 #include <wx/listctrl.h> 42 #include <wx/checklst.h> 43 #include <wx/button.h> 44 #include <wx/wupdlock.h> 83

wxWindowID

id

const

wxString& caption,

const

wxPoint& pos,

const

wxSize&

size

long

style)

84

: m_Seh(seh), m_FtblIDs(ftblids)

87 Create

(parent,

id

, caption, pos,

size

, style);

98

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

99

wxDialog::Create( parent,

id

, caption, pos,

size

, style );

104

GetSizer()->SetSizeHints(

this

);

148

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

149

itemDialog1->SetSizer(itemBoxSizer2);

151

wxStaticText* itemStaticText3 =

new

wxStaticText( itemDialog1, wxID_STATIC,

(

"Feature Table IDs not found in record"

), wxDefaultPosition, wxDefaultSize, 0 );

152

itemBoxSizer2->Add(itemStaticText3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

154

wxBoxSizer* itemBoxSizer4 =

new

wxBoxSizer(wxHORIZONTAL);

155

itemBoxSizer2->Add(itemBoxSizer4, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 1);

157

wxBoxSizer* itemBoxSizer5 =

new

wxBoxSizer(wxVERTICAL);

158

itemBoxSizer4->Add(itemBoxSizer5, 0, wxALIGN_CENTER_VERTICAL|wxALL, 3);

166

wxBoxSizer* itemBoxSizer8 =

new

wxBoxSizer(wxVERTICAL);

167

itemBoxSizer4->Add(itemBoxSizer8, 0, wxALIGN_CENTER_VERTICAL|wxALL, 3);

175 m_Map

new

wxButton( itemDialog1,

ID_FEATTBLID_BTN

(

"Map Selected"

), wxDefaultPosition, wxDefaultSize, 0 );

176

itemBoxSizer2->Add(

m_Map

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 3);

178

wxBoxSizer* itemBoxSizer12 =

new

wxBoxSizer(wxHORIZONTAL);

179

itemBoxSizer2->Add(itemBoxSizer12, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

181

wxButton* itemButton13 =

new

wxButton( itemDialog1,

ID_AUTOMATCH_TABLE_ID

(

"AutoMatch where table ID"

), wxDefaultPosition, wxDefaultSize, 0 );

182

itemBoxSizer12->Add(itemButton13, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

184

wxArrayString m_AutoMatchTypeStrings;

185

m_AutoMatchTypeStrings.Add(

(

"Matches"

));

186

m_AutoMatchTypeStrings.Add(

(

"Is contained in"

));

187

m_AutoMatchTypeStrings.Add(

(

"Is start of"

));

188

m_AutoMatchTypeStrings.Add(

(

"Is end of"

));

190

itemBoxSizer12->Add(

m_AutoMatchType

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

192

wxStaticText* itemStaticText15 =

new

wxStaticText( itemDialog1, wxID_STATIC,

(

"record ID"

), wxDefaultPosition, wxDefaultSize, 0 );

193

itemBoxSizer12->Add(itemStaticText15, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

195

wxStaticText* itemStaticText16 =

new

wxStaticText( itemDialog1, wxID_STATIC,

(

"Selected matches"

), wxDefaultPosition, wxDefaultSize, 0 );

196

itemBoxSizer2->Add(itemStaticText16, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 3);

198

wxArrayString m_MappedIDsStrings;

200

itemBoxSizer2->Add(

m_MappedIDs

, 1, wxEXPAND| wxALL, 5);

202

wxBoxSizer* itemBoxSizer18 =

new

wxBoxSizer(wxHORIZONTAL);

203

itemBoxSizer2->Add(itemBoxSizer18, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 2);

205

wxButton* itemButton19 =

new

wxButton( itemDialog1, wxID_OK,

(

"OK"

), wxDefaultPosition, wxDefaultSize, 0 );

206

itemBoxSizer18->Add(itemButton19, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

208

wxButton* itemButton20 =

new

wxButton( itemDialog1, wxID_CANCEL,

(

"Cancel"

), wxDefaultPosition, wxDefaultSize, 0 );

209

itemBoxSizer18->Add(itemButton20, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

220 if

((*id_it)->IsGeneral() && (*id_it)->GetGeneral().IsSetDb() &&

221

((*id_it)->GetGeneral().GetDb() ==

"TMSMART"

|| (*id_it)->GetGeneral().GetDb() ==

"BankIt"

|| (*id_it)->GetGeneral().GetDb() ==

"NCBIFILE"

))

223 string

id_label = (*id_it)->AsFastaString();

224 if

label

.empty()) {

239 id

->GetLabel(&

label

);

254 return

wxDialog::TransferDataToWindow();

261

ftbl_seqid_map.

clear

();

262

wxArrayInt checked_items;

266 for

(

unsigned int n

= 0;

< checked_items.size(); ++

) {

269 string

ftbl_label =

text

.substr(0, pos);

335 if

(item_ftbl == -1 || item_seqid == -1) {

351 switch

(match_type) {

357 if

(

NStr::Find

(ft_id,

"."

) == string::npos) {

359 if

(ver != string::npos &&

NStr::Equal

(ft_id, rec_id.substr(0, ver))) {

401

wxArrayString matched_ids;

414 for

(

size_t i

= 0;

< matched_ids.size(); ++

) {

424

item_ftbl =

m_FeatTableIDList

->GetNextItem(item_ftbl, wxLIST_NEXT_ALL, wxLIST_STATE_DONTCARE);

425 if

(item_ftbl == -1)

break

;

428

ftcheck = ftcheck.substr(4);

430 long

item_seqid = -1;

431 bool

found_match =

false

;

432 while

(!found_match) {

433

item_seqid =

m_SequenceIDList

->GetNextItem(item_seqid, wxLIST_NEXT_ALL, wxLIST_STATE_DONTCARE);

434 if

(item_seqid == -1)

break

;

436

vector<CTempString> tokens;

438 ITERATE

(vector<CTempString>,

, tokens) {

456

item_ftbl =

m_FeatTableIDList

->GetNextItem(item_ftbl, wxLIST_NEXT_ALL, wxLIST_STATE_DONTCARE);

457 if

(item_ftbl == -1)

break

;

460

ftcheck = ftcheck.substr(4);

464

label_to_item[ftcheck] = item_ftbl;

469 string

gnl = ftcheck.substr(pos + 1,

NPOS

);

471

label_to_item[gnl] = item_ftbl;

476 long

item_seqid = -1;

479

item_seqid =

m_SequenceIDList

->GetNextItem(item_seqid, wxLIST_NEXT_ALL, wxLIST_STATE_DONTCARE);

480 if

(item_seqid == -1)

break

;

482

vector<CTempString> tokens;

484 ITERATE

(vector<CTempString>,

, tokens) {

485 auto

p = label_to_item.

find

);

486 if

(p == label_to_item.

end

()) {

488 if

(ver != string::npos) {

489

p = label_to_item.

find

(

->substr(0, ver));

492 if

(p != label_to_item.

end

()) {

494

to_delete.

insert

(p->second);

499 for

(

auto

p = to_delete.rbegin(); p != to_delete.rend(); ++p) {

wxCheckListBox * m_MappedIDs

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void x_AddMatch(long item_ftbl, long item_seqid)

void OnMapSelectedBtnClick(wxCommandEvent &event)

wxEVT_COMMAND_BUTTON_CLICKED event handler for ID_FEATTBLID_BTN

objects::CSeq_entry_Handle m_Seh

void QuadraticAutomatch(wxArrayString &matched_ids)

wxChoice * m_AutoMatchType

void LinearAutomatch(wxArrayString &matched_ids)

void CreateControls()

Creates the controls and sizers.

bool Create(wxWindow *parent, wxWindowID id=ID_CMATCHFEATURETABLEDLG, const wxString &caption=_("Match Feature Table IDs"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

wxListView * m_SequenceIDList

const set< objects::CSeq_id_Handle > m_FtblIDs

CMatchFeatureTableDlg()

Constructors.

void GetFtableIDToSeqIDMap(TFeatSeqIDMap &ftbl_seqid_map)

void OnAutomatchTableIdClick(wxCommandEvent &event)

wxEVT_COMMAND_BUTTON_CLICKED event handler for ID_AUTOMATCH_TABLE_ID

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

~CMatchFeatureTableDlg()

Destructor.

bool TransferDataToWindow()

bool x_TokenMatch(const string &ft, const string &rec)

static bool ShowToolTips()

Should we show tooltips?

wxListView * m_FeatTableIDList

void Init()

Initialises member variables.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

container_type::const_iterator const_iterator

const_iterator end() const

iterator_bool insert(const value_type &val)

container_type::value_type value_type

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Seq_id_BestRank

use CSeq_id::BestRank() as the scoring function

TBioseqCore GetBioseqCore(void) const

Get bioseq core structure.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

NCBI_NS_STD::string::size_type SIZE_TYPE

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static SIZE_TYPE FindNoCase(const CTempString str, const CTempString pattern, SIZE_TYPE start, SIZE_TYPE end, EOccurrence which=eFirst)

Find the pattern in the specified range of a string using a case insensitive search.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

@ eNocase

Case insensitive compare.

static const char label[]

const TId & GetId(void) const

Get the Id member data.

list< CRef< CSeq_id > > TId

@ eMol_na

just a nucleic acid

static const char * sToSign

string s_GetDisplayLabel(CBioseq_Handle bh)

static void text(MDB_val *v)

const struct ncbi::grid::netcache::search::fields::SIZE size

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

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Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/match__feat__table__dlg_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/match_feat_table_dlg.cpp Source File

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/matchfeattable__dlg_8cpp_source.html below: