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NCBI C++ ToolKit: src/algo/blast/core/masksubj.inl Source File

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(range[1] > range[2]) {

(range[0] >= (

)

->num_seq_ranges) {

range[1] =

->seq_ranges[range[0]].left + word_length - lut_word_length;

range[2] =

->seq_ranges[range[0]].right - lut_word_length;

int32_t Int4

4-byte (32-bit) signed integer

static NCBI_INLINE Boolean s_DetermineScanningOffsets(const BLAST_SequenceBlk *subject, Int4 word_length, Int4 lut_word_length, Int4 *range)

Determines the scanner's offsets taking the database masking restrictions into account (if any).

#define NCBI_INLINE

"inline" seems to work on our remaining in-house compilers (WorkShop, Compaq, ICC,...

Uint1 Boolean

bool replacment for C

#define TRUE

bool replacment for C indicating true.

#define FALSE

bool replacment for C indicating false.

#define ASSERT

macro for assert.

Structure to hold a sequence.

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