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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/masked__range__set_8cpp_source.html below:

NCBI C++ ToolKit: src/app/blastdb/masked_range_set.cpp Source File

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33 #ifndef SKIP_DOXYGEN_PROCESSING 44

algo_iter->offsets.resize(0);

45  int

algo_id = algo_iter->algorithm_id;

56  if

(oid_ranges.

Empty

()) {

60  for

(

CSeq_loc_CI

ranges(*oid_ranges); ranges; ++ranges) {

64

algo_iter->offsets.push_back(pr);

75  if

((

int

)

m_Values

.size() > algo_id) {

80  if

(iter != m.

end

()) {

98  if

((

int

)

m_Values

.size() <= algo_id) {

vector< TAlgoMap > m_Values

CMaskedRangesVector m_Ranges

static void x_CombineLocs(CConstRef< CSeq_loc > &L1, const CSeq_loc &L2)

void x_FindAndCombine(CConstRef< CSeq_loc > &L1, int algo_id, CSeq_id_Handle &id)

CConstRef< CSeq_loc > & x_Set(int algo_id, CSeq_id_Handle id)

virtual CMaskedRangesVector & GetRanges(const list< CRef< CSeq_id > > &idlist)

Get ranges of masking data for the given Seq-ids.

This represents a set of masks for a given sequence.

Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order.

container_type::const_iterator const_iterator

const_iterator end() const

const_iterator find(const key_type &key) const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

void Add(const CSeq_loc &other)

Simple adding of seq-locs.

bool Empty(void) const THROWS_NONE

Check if CConstRef is empty – not pointing to any object which means having a null value.

void Reset(void)

Reset reference object.

position_type GetToOpen(void) const

TFrom GetFrom(void) const

Get the From member data.

constexpr bool empty(list< Ts... >) noexcept

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