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NCBI C++ ToolKit: src/objtools/seqmasks_io/mask_writer_tab.cpp Source File

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ncbi::TMaskedQueryRegions mask

virtual void Print(objects::CBioseq_Handle &bsh, const TMaskList &mask, bool parsed_id=false)

Send the masking data to the output stream.

virtual string IdToString(objects::CBioseq_Handle &bsh, bool parsed_id)

Convert the sequence id to a string.

CNcbiOstream & os

the standard C++ ostream object

vector< TMaskedInterval > TMaskList

A type representing the total of masking information about a sequence.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

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